KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies

MOTIVATION: De novo assembly of whole genome shotgun (WGS) next-generation sequencing (NGS) data benefits from high-quality input with high coverage. However, in practice, determining the quality and quantity of useful reads quickly and in a reference-free manner is not trivial. Gaining a better und...

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Detalles Bibliográficos
Autores principales: Mapleson, Daniel, Garcia Accinelli, Gonzalo, Kettleborough, George, Wright, Jonathan, Clavijo, Bernardo J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408915/
https://www.ncbi.nlm.nih.gov/pubmed/27797770
http://dx.doi.org/10.1093/bioinformatics/btw663

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408915/
https://www.ncbi.nlm.nih.gov/pubmed/27797770
http://dx.doi.org/10.1093/bioinformatics/btw663

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