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Ordinary differential equations and Boolean networks in application to modelling of 6-mercaptopurine metabolism
We consider two approaches to modelling the cell metabolism of 6-mercaptopurine, one of the important chemotherapy drugs used for treating acute lymphocytic leukaemia: kinetic ordinary differential equations, and Boolean networks supplied with one controlling node, which takes continual values. We a...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society Publishing
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414245/ https://www.ncbi.nlm.nih.gov/pubmed/28484608 http://dx.doi.org/10.1098/rsos.160872 |
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author | Lavrova, Anastasia I. Postnikov, Eugene B. Zyubin, Andrey Yu. Babak, Svetlana V. |
author_facet | Lavrova, Anastasia I. Postnikov, Eugene B. Zyubin, Andrey Yu. Babak, Svetlana V. |
author_sort | Lavrova, Anastasia I. |
collection | PubMed |
description | We consider two approaches to modelling the cell metabolism of 6-mercaptopurine, one of the important chemotherapy drugs used for treating acute lymphocytic leukaemia: kinetic ordinary differential equations, and Boolean networks supplied with one controlling node, which takes continual values. We analyse their interplay with respect to taking into account ATP concentration as a key parameter of switching between different pathways. It is shown that the Boolean networks, which allow avoiding the complexity of general kinetic modelling, preserve the possibility of reproducing the principal switching mechanism. |
format | Online Article Text |
id | pubmed-5414245 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | The Royal Society Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-54142452017-05-08 Ordinary differential equations and Boolean networks in application to modelling of 6-mercaptopurine metabolism Lavrova, Anastasia I. Postnikov, Eugene B. Zyubin, Andrey Yu. Babak, Svetlana V. R Soc Open Sci Biochemistry and Biophysics We consider two approaches to modelling the cell metabolism of 6-mercaptopurine, one of the important chemotherapy drugs used for treating acute lymphocytic leukaemia: kinetic ordinary differential equations, and Boolean networks supplied with one controlling node, which takes continual values. We analyse their interplay with respect to taking into account ATP concentration as a key parameter of switching between different pathways. It is shown that the Boolean networks, which allow avoiding the complexity of general kinetic modelling, preserve the possibility of reproducing the principal switching mechanism. The Royal Society Publishing 2017-04-12 /pmc/articles/PMC5414245/ /pubmed/28484608 http://dx.doi.org/10.1098/rsos.160872 Text en © 2017 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Biochemistry and Biophysics Lavrova, Anastasia I. Postnikov, Eugene B. Zyubin, Andrey Yu. Babak, Svetlana V. Ordinary differential equations and Boolean networks in application to modelling of 6-mercaptopurine metabolism |
title | Ordinary differential equations and Boolean networks in application to modelling of 6-mercaptopurine metabolism |
title_full | Ordinary differential equations and Boolean networks in application to modelling of 6-mercaptopurine metabolism |
title_fullStr | Ordinary differential equations and Boolean networks in application to modelling of 6-mercaptopurine metabolism |
title_full_unstemmed | Ordinary differential equations and Boolean networks in application to modelling of 6-mercaptopurine metabolism |
title_short | Ordinary differential equations and Boolean networks in application to modelling of 6-mercaptopurine metabolism |
title_sort | ordinary differential equations and boolean networks in application to modelling of 6-mercaptopurine metabolism |
topic | Biochemistry and Biophysics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414245/ https://www.ncbi.nlm.nih.gov/pubmed/28484608 http://dx.doi.org/10.1098/rsos.160872 |
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