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A critical examination of the recently reported crystal structures of the human SMN protein

A recent publication by Seng et al. in this journal reports the crystallographic structure of refolded, full-length SMN protein and two disease-relevant derivatives thereof. Here, we would like to suggest that at least two of the structures reported in that study are incorrect. We present evidence t...

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Autores principales: Weiss, Manfred S., Diederichs, Kay, Read, Randy J., Panjikar, Santosh, Van Duyne, Gregory D., Matera, A. Gregory, Fischer, Utz, Grimm, Clemens
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5418738/
https://www.ncbi.nlm.nih.gov/pubmed/27577872
http://dx.doi.org/10.1093/hmg/ddw298
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author Weiss, Manfred S.
Diederichs, Kay
Read, Randy J.
Panjikar, Santosh
Van Duyne, Gregory D.
Matera, A. Gregory
Fischer, Utz
Grimm, Clemens
author_facet Weiss, Manfred S.
Diederichs, Kay
Read, Randy J.
Panjikar, Santosh
Van Duyne, Gregory D.
Matera, A. Gregory
Fischer, Utz
Grimm, Clemens
author_sort Weiss, Manfred S.
collection PubMed
description A recent publication by Seng et al. in this journal reports the crystallographic structure of refolded, full-length SMN protein and two disease-relevant derivatives thereof. Here, we would like to suggest that at least two of the structures reported in that study are incorrect. We present evidence that one of the associated crystallographic datasets is derived from a crystal of the bacterial Sm-like protein Hfq and that a second dataset is derived from a crystal of the bacterial Gab protein. Both proteins are frequent contaminants of bacterially overexpressed proteins which might have been co-purified during metal affinity chromatography. A third structure presented in the Seng et al. paper cannot be examined further because neither the atomic coordinates, nor the diffraction intensities were made publicly available. The Tudor domain protein SMN has been shown to be a component of the SMN complex, which mediates the assembly of RNA-protein complexes of uridine-rich small nuclear ribonucleoproteins (UsnRNPs). Importantly, this activity is reduced in SMA patients, raising the possibility that the aetiology of SMA is linked to RNA metabolism. Structural studies on diverse components of the SMN complex, including fragments of SMN itself have contributed greatly to our understanding of the cellular UsnRNP assembly machinery. Yet full-length SMN has so far evaded structural elucidation. The Seng et al. study claimed to have closed this gap, but based on the results presented here, the only conclusion that can be drawn is that the Seng et al. study is largely invalid and should be retracted from the literature.
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spelling pubmed-54187382017-05-10 A critical examination of the recently reported crystal structures of the human SMN protein Weiss, Manfred S. Diederichs, Kay Read, Randy J. Panjikar, Santosh Van Duyne, Gregory D. Matera, A. Gregory Fischer, Utz Grimm, Clemens Hum Mol Genet Articles A recent publication by Seng et al. in this journal reports the crystallographic structure of refolded, full-length SMN protein and two disease-relevant derivatives thereof. Here, we would like to suggest that at least two of the structures reported in that study are incorrect. We present evidence that one of the associated crystallographic datasets is derived from a crystal of the bacterial Sm-like protein Hfq and that a second dataset is derived from a crystal of the bacterial Gab protein. Both proteins are frequent contaminants of bacterially overexpressed proteins which might have been co-purified during metal affinity chromatography. A third structure presented in the Seng et al. paper cannot be examined further because neither the atomic coordinates, nor the diffraction intensities were made publicly available. The Tudor domain protein SMN has been shown to be a component of the SMN complex, which mediates the assembly of RNA-protein complexes of uridine-rich small nuclear ribonucleoproteins (UsnRNPs). Importantly, this activity is reduced in SMA patients, raising the possibility that the aetiology of SMA is linked to RNA metabolism. Structural studies on diverse components of the SMN complex, including fragments of SMN itself have contributed greatly to our understanding of the cellular UsnRNP assembly machinery. Yet full-length SMN has so far evaded structural elucidation. The Seng et al. study claimed to have closed this gap, but based on the results presented here, the only conclusion that can be drawn is that the Seng et al. study is largely invalid and should be retracted from the literature. Oxford University Press 2016-11-01 2016-08-29 /pmc/articles/PMC5418738/ /pubmed/27577872 http://dx.doi.org/10.1093/hmg/ddw298 Text en © The Author 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Articles
Weiss, Manfred S.
Diederichs, Kay
Read, Randy J.
Panjikar, Santosh
Van Duyne, Gregory D.
Matera, A. Gregory
Fischer, Utz
Grimm, Clemens
A critical examination of the recently reported crystal structures of the human SMN protein
title A critical examination of the recently reported crystal structures of the human SMN protein
title_full A critical examination of the recently reported crystal structures of the human SMN protein
title_fullStr A critical examination of the recently reported crystal structures of the human SMN protein
title_full_unstemmed A critical examination of the recently reported crystal structures of the human SMN protein
title_short A critical examination of the recently reported crystal structures of the human SMN protein
title_sort critical examination of the recently reported crystal structures of the human smn protein
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5418738/
https://www.ncbi.nlm.nih.gov/pubmed/27577872
http://dx.doi.org/10.1093/hmg/ddw298
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