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A fast image simulation algorithm for scanning transmission electron microscopy

Image simulation for scanning transmission electron microscopy at atomic resolution for samples with realistic dimensions can require very large computation times using existing simulation algorithms. We present a new algorithm named PRISM that combines features of the two most commonly used algorit...

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Detalles Bibliográficos
Autor principal: Ophus, Colin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5423922/
https://www.ncbi.nlm.nih.gov/pubmed/28546904
http://dx.doi.org/10.1186/s40679-017-0046-1
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author Ophus, Colin
author_facet Ophus, Colin
author_sort Ophus, Colin
collection PubMed
description Image simulation for scanning transmission electron microscopy at atomic resolution for samples with realistic dimensions can require very large computation times using existing simulation algorithms. We present a new algorithm named PRISM that combines features of the two most commonly used algorithms, namely the Bloch wave and multislice methods. PRISM uses a Fourier interpolation factor f that has typical values of 4–20 for atomic resolution simulations. We show that in many cases PRISM can provide a speedup that scales with f (4) compared to multislice simulations, with a negligible loss of accuracy. We demonstrate the usefulness of this method with large-scale scanning transmission electron microscopy image simulations of a crystalline nanoparticle on an amorphous carbon substrate.
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spelling pubmed-54239222017-05-23 A fast image simulation algorithm for scanning transmission electron microscopy Ophus, Colin Adv Struct Chem Imaging Research Image simulation for scanning transmission electron microscopy at atomic resolution for samples with realistic dimensions can require very large computation times using existing simulation algorithms. We present a new algorithm named PRISM that combines features of the two most commonly used algorithms, namely the Bloch wave and multislice methods. PRISM uses a Fourier interpolation factor f that has typical values of 4–20 for atomic resolution simulations. We show that in many cases PRISM can provide a speedup that scales with f (4) compared to multislice simulations, with a negligible loss of accuracy. We demonstrate the usefulness of this method with large-scale scanning transmission electron microscopy image simulations of a crystalline nanoparticle on an amorphous carbon substrate. Springer International Publishing 2017-05-10 2017 /pmc/articles/PMC5423922/ /pubmed/28546904 http://dx.doi.org/10.1186/s40679-017-0046-1 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Research
Ophus, Colin
A fast image simulation algorithm for scanning transmission electron microscopy
title A fast image simulation algorithm for scanning transmission electron microscopy
title_full A fast image simulation algorithm for scanning transmission electron microscopy
title_fullStr A fast image simulation algorithm for scanning transmission electron microscopy
title_full_unstemmed A fast image simulation algorithm for scanning transmission electron microscopy
title_short A fast image simulation algorithm for scanning transmission electron microscopy
title_sort fast image simulation algorithm for scanning transmission electron microscopy
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5423922/
https://www.ncbi.nlm.nih.gov/pubmed/28546904
http://dx.doi.org/10.1186/s40679-017-0046-1
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