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A fast image simulation algorithm for scanning transmission electron microscopy
Image simulation for scanning transmission electron microscopy at atomic resolution for samples with realistic dimensions can require very large computation times using existing simulation algorithms. We present a new algorithm named PRISM that combines features of the two most commonly used algorit...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer International Publishing
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5423922/ https://www.ncbi.nlm.nih.gov/pubmed/28546904 http://dx.doi.org/10.1186/s40679-017-0046-1 |
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author | Ophus, Colin |
author_facet | Ophus, Colin |
author_sort | Ophus, Colin |
collection | PubMed |
description | Image simulation for scanning transmission electron microscopy at atomic resolution for samples with realistic dimensions can require very large computation times using existing simulation algorithms. We present a new algorithm named PRISM that combines features of the two most commonly used algorithms, namely the Bloch wave and multislice methods. PRISM uses a Fourier interpolation factor f that has typical values of 4–20 for atomic resolution simulations. We show that in many cases PRISM can provide a speedup that scales with f (4) compared to multislice simulations, with a negligible loss of accuracy. We demonstrate the usefulness of this method with large-scale scanning transmission electron microscopy image simulations of a crystalline nanoparticle on an amorphous carbon substrate. |
format | Online Article Text |
id | pubmed-5423922 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-54239222017-05-23 A fast image simulation algorithm for scanning transmission electron microscopy Ophus, Colin Adv Struct Chem Imaging Research Image simulation for scanning transmission electron microscopy at atomic resolution for samples with realistic dimensions can require very large computation times using existing simulation algorithms. We present a new algorithm named PRISM that combines features of the two most commonly used algorithms, namely the Bloch wave and multislice methods. PRISM uses a Fourier interpolation factor f that has typical values of 4–20 for atomic resolution simulations. We show that in many cases PRISM can provide a speedup that scales with f (4) compared to multislice simulations, with a negligible loss of accuracy. We demonstrate the usefulness of this method with large-scale scanning transmission electron microscopy image simulations of a crystalline nanoparticle on an amorphous carbon substrate. Springer International Publishing 2017-05-10 2017 /pmc/articles/PMC5423922/ /pubmed/28546904 http://dx.doi.org/10.1186/s40679-017-0046-1 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Research Ophus, Colin A fast image simulation algorithm for scanning transmission electron microscopy |
title | A fast image simulation algorithm for scanning transmission electron microscopy |
title_full | A fast image simulation algorithm for scanning transmission electron microscopy |
title_fullStr | A fast image simulation algorithm for scanning transmission electron microscopy |
title_full_unstemmed | A fast image simulation algorithm for scanning transmission electron microscopy |
title_short | A fast image simulation algorithm for scanning transmission electron microscopy |
title_sort | fast image simulation algorithm for scanning transmission electron microscopy |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5423922/ https://www.ncbi.nlm.nih.gov/pubmed/28546904 http://dx.doi.org/10.1186/s40679-017-0046-1 |
work_keys_str_mv | AT ophuscolin afastimagesimulationalgorithmforscanningtransmissionelectronmicroscopy AT ophuscolin fastimagesimulationalgorithmforscanningtransmissionelectronmicroscopy |