Cargando…

Spectral imaging toolbox: segmentation, hyperstack reconstruction, and batch processing of spectral images for the determination of cell and model membrane lipid order

BACKGROUND: Spectral imaging with polarity-sensitive fluorescent probes enables the quantification of cell and model membrane physical properties, including local hydration, fluidity, and lateral lipid packing, usually characterized by the generalized polarization (GP) parameter. With the developmen...

Descripción completa

Detalles Bibliográficos
Autores principales:	Aron, Miles, Browning, Richard, Carugo, Dario, Sezgin, Erdinc, Bernardino de la Serna, Jorge, Eggeling, Christian, Stride, Eleanor
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5427590/ https://www.ncbi.nlm.nih.gov/pubmed/28494801 http://dx.doi.org/10.1186/s12859-017-1656-2

Ejemplares similares

Spectral Imaging to Measure Heterogeneity in Membrane Lipid Packing
por: Sezgin, Erdinc, et al.
Publicado: (2015)

Electroformation of Giant Unilamellar Vesicles on Stainless Steel Electrodes
por: Pereno, Valerio, et al.
Publicado: (2017)

Creating Supported Plasma Membrane Bilayers Using Acoustic Pressure
por: Sezgin, Erdinc, et al.
Publicado: (2020)

Easing batch image processing from OMERO: a new toolbox for ImageJ
por: Pouchin, Pierre, et al.
Publicado: (2022)

SpectralNET – an application for spectral graph analysis and visualization
por: Forman, Joshua J, et al.
Publicado: (2005)

SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering
por: Cresswell, Kellen G., et al.
Publicado: (2020)

Nanoscale Spatiotemporal Diffusion Modes Measured by Simultaneous Confocal and Stimulated Emission Depletion Nanoscopy Imaging
por: Schneider, Falk, et al.
Publicado: (2018)

SUFI: an automated approach to spectral unmixing of fluorescent multiplex images captured in mouse and post-mortem human brain tissues
por: Sadashivaiah, Vijay, et al.
Publicado: (2023)

The Spectral Game: leveraging Open Data and crowdsourcing for education
por: Bradley, Jean-Claude, et al.
Publicado: (2009)

CaPTure: Calcium PeakToolbox for analysis of in vitro calcium imaging data
por: Tippani, Madhavi, et al.
Publicado: (2022)

Rapid spectral analysis for spectral imaging
por: Jacques, Steven L., et al.
Publicado: (2010)

PFA: Program for the Quantitative Assessment of Cell Metabolism by Spectral Data Analysis
por: Orr, Chris, et al.
Publicado: (2008)

SpecP: A tool for spectral partitioning of protein contact graph
por: Namboodiri, Saritha, et al.
Publicado: (2013)

Automics: an integrated platform for NMR-based metabonomics spectral processing and data analysis
por: Wang, Tao, et al.
Publicado: (2009)

A Dynamic Noise Level Algorithm for Spectral Screening of Peptide MS/MS Spectra
por: Xu, Hua, et al.
Publicado: (2010)

CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels
por: Kartasalo, Kimmo, et al.
Publicado: (2015)

mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics
por: Thielen, Bernhard, et al.
Publicado: (2009)

Spectral imaging of the atmosphere
por: Shepherd, G. G.
Publicado: (2002)

Fluorescence and Spectral Imaging
por: DaCosta, Ralph S., et al.
Publicado: (2007)

Surgical spectral imaging
por: Clancy, Neil T., et al.
Publicado: (2020)

Bump time-frequency toolbox: a toolbox for time-frequency oscillatory bursts extraction in electrophysiological signals
por: Vialatte, François B, et al.
Publicado: (2009)

Open Babel: An open chemical toolbox
por: O'Boyle, Noel M, et al.
Publicado: (2011)

The MULTICOM toolbox for protein structure prediction
por: Cheng, Jianlin, et al.
Publicado: (2012)

TOGGLE: toolbox for generic NGS analyses
por: Monat, Cécile, et al.
Publicado: (2015)

LocalZProjector and DeProj: a toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images
por: Herbert, Sébastien, et al.
Publicado: (2021)

BatchGenAna: a batch platform for large-scale genomic analysis of mammalian small RNAs
por: Ying, Xiaomin, et al.
Publicado: (2009)

The JSpecView Project: an Open Source Java viewer and converter for JCAMP-DX, and XML spectral data files
por: Lancashire, Robert J
Publicado: (2007)

SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale
por: Nepusz, Tamás, et al.
Publicado: (2010)

SPECtre: a spectral coherence-based classifier of actively translated transcripts from ribosome profiling sequence data
por: Chun, Sang Y., et al.
Publicado: (2016)

ARBO: Arbovirus modeling and uncertainty quantification toolbox [Image: see text]
por: Tosin, Michel, et al.
Publicado: (2022)

Spectral clustering for TRUS images
por: Mohamed, Samar S, et al.
Publicado: (2007)

Spectral Imaging at the Microscale and Beyond
por: Paquet-Mercier, François, et al.
Publicado: (2014)

Spectral image scanning microscopy
por: Strasser, Franziska, et al.
Publicado: (2019)

Spectral imaging with deep learning
por: Huang, Longqian, et al.
Publicado: (2022)

A versatile method for the preparation of particle-loaded microbubbles for multimodality imaging and targeted drug delivery
por: Owen, Joshua, et al.
Publicado: (2017)

MBECS: Microbiome Batch Effects Correction Suite
por: Olbrich, Michael, et al.
Publicado: (2023)

SNA – a toolbox for the stoichiometric analysis of metabolic networks
por: Urbanczik, Robert
Publicado: (2006)

DeltaProt: a software toolbox for comparative genomics
por: Thorvaldsen, Steinar, et al.
Publicado: (2010)

RepBox: a toolbox for the identification of repetitive elements
por: Burkes-Patton, Shelvasha, et al.
Publicado: (2023)

A spectral optical flow method for determining velocities from digital imagery
por: Hurlburt, Neal, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_ed87bl38iuf0dfs6ookajo8kjq