Cargando…

Predicting influenza antigenicity from Hemagglutintin sequence data based on a joint random forest method

Timely identification of emerging antigenic variants is critical to influenza vaccine design. The accuracy of a sequence-based antigenic prediction method relies on the choice of amino acids substitution matrices. In this study, we first compared a comprehensive 95 substitution matrices reflecting v...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yao, Yuhua, Li, Xianhong, Liao, Bo, Huang, Li, He, Pingan, Wang, Fayou, Yang, Jiasheng, Sun, Hailiang, Zhao, Yulong, Yang, Jialiang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5431489/ https://www.ncbi.nlm.nih.gov/pubmed/28484283 http://dx.doi.org/10.1038/s41598-017-01699-z

Ejemplares similares

Plant-Produced Recombinant Influenza A Virus Candidate Vaccine Based on Flagellin Linked to Conservative Fragments of M2 Protein and Hemagglutintin
por: Blokhina, Elena A., et al.
Publicado: (2020)

Using Sequence Data To Infer the Antigenicity of Influenza Virus
por: Sun, Hailiang, et al.
Publicado: (2013)

Predicting Influenza Antigenicity by Matrix Completion With Antigen and Antiserum Similarity
por: Wang, Peng, et al.
Publicado: (2018)

A systematic study on drug-response associated genes using baseline gene expressions of the Cancer Cell Line Encyclopedia
por: Liu, Xiaoming, et al.
Publicado: (2016)

An Alignment-Free Algorithm in Comparing the Similarity of Protein Sequences Based on Pseudo-Markov Transition Probabilities among Amino Acids
por: Li, Yushuang, et al.
Publicado: (2016)

Study of LZ-word distribution and its application for sequence comparison
por: Dai, Qi, et al.
Publicado: (2013)

Improved Human Age Prediction by Using Gene Expression Profiles From Multiple Tissues
por: Wang, Fayou, et al.
Publicado: (2020)

Biological ingredient complement chemical ingredient in the assessment of the quality of TCM preparations
por: Bai, Hong, et al.
Publicado: (2019)

Sequence-Based Antigenic Change Prediction by a Sparse Learning Method Incorporating Co-Evolutionary Information
por: Yang, Jialiang, et al.
Publicado: (2014)

Prediction of High-Risk Types of Human Papillomaviruses Using Statistical Model of Protein “Sequence Space”
por: Wang, Cong, et al.
Publicado: (2015)

Editorial: Bioinformatics Analysis of Single Cell Sequencing Data and Applications in Precision Medicine
por: Yang, Jialiang, et al.
Publicado: (2020)

Evolutionary dynamics of the H7N9 avian influenza virus based on large-scale sequence analysis
por: Xiong, Jiasheng, et al.
Publicado: (2019)

Integrative random forest for gene regulatory network inference
por: Petralia, Francesca, et al.
Publicado: (2015)

Antigenic cartography of H1N1 influenza viruses using sequence-based antigenic distance calculation
por: Anderson, Christopher S., et al.
Publicado: (2018)

Molecular Characteristics, Antigenicity, Pathogenicity, and Zoonotic Potential of a H3N2 Canine Influenza Virus Currently Circulating in South China
por: Wu, Meihua, et al.
Publicado: (2021)

Determinants of antigenicity and specificity in immune response for protein sequences
por: Wang, Yulong, et al.
Publicado: (2011)

BPLLDA: Predicting lncRNA-Disease Associations Based on Simple Paths With Limited Lengths in a Heterogeneous Network
por: Xiao, Xiaofang, et al.
Publicado: (2018)

Comparison study on statistical features of predicted secondary structures for protein structural class prediction: From content to position
por: Dai, Qi, et al.
Publicado: (2013)

Alpha and beta diversity jointly drive the aboveground biomass in temperate and tropical forests
por: Yao, Jie, et al.
Publicado: (2023)

A quantile regression forest based method to predict drug response and assess prediction reliability
por: Fang, Yun, et al.
Publicado: (2018)

Selection of antigenically advanced variants of seasonal influenza viruses
por: Li, Chengjun, et al.
Publicado: (2016)

Systematic Tracing of Susceptible Animals to SARS-CoV-2 by a Bioinformatics Framework
por: Sun, Hailiang, et al.
Publicado: (2022)

Identification of human age-associated gene co-expressions in functional modules using liquid association
por: Yang, Jialiang, et al.
Publicado: (2017)

Predicting the Mutating Distribution at Antigenic Sites of the Influenza Virus
por: Xu, Hongyang, et al.
Publicado: (2016)

Recent progress in improving the safety and efficacy of chimeric antigen receptor T cell therapy
por: Yang, Yingying, et al.
Publicado: (2018)

Correction to: Using single-cell sequencing technology to detect circulating tumor cells in solid tumors
por: Xu, Jiasheng, et al.
Publicado: (2022)

Continual Antigenic Diversification in China Leads to Global Antigenic Complexity of Avian Influenza H5N1 Viruses
por: Peng, Yousong, et al.
Publicado: (2017)

Improved Pre-miRNAs Identification Through Mutual Information of Pre-miRNA Sequences and Structures
por: Fu, Xiangzheng, et al.
Publicado: (2019)

Evolution and Antigenic Drift of Influenza A (H7N9) Viruses, China, 2017–2019
por: Zhang, Jiahao, et al.
Publicado: (2020)

ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time
por: Cai, Yunpeng, et al.
Publicado: (2017)

Corrigendum: Continual Antigenic Diversification in China Leads to Global Antigenic Complexity of Avian Influenza H5N1 Viruses
por: Peng, Yousong, et al.
Publicado: (2018)

Using single-cell sequencing technology to detect circulating tumor cells in solid tumors
por: Xu, Jiasheng, et al.
Publicado: (2021)

Whole‐genome sequencing and antigenic analysis of the first equine influenza virus identified in Turkey
por: Gahan, Jacinta, et al.
Publicado: (2018)

Evaluating the Microsatellite Instability of Colorectal Cancer Based on Multimodal Deep Learning Integrating Histopathological and Molecular Data
por: Qiu, Wenjing, et al.
Publicado: (2022)

The comparative study of clinical efficacy and safety of baclofen vs tolperisone in spasticity caused by spinal cord injury
por: Luo, Dejun, et al.
Publicado: (2017)

The joint effects of forest habitat area and fragmentation on dung beetles
por: Mbora, David Nyaga Mugo, et al.
Publicado: (2023)

Forest Gaps Alter the Total Phenol Dynamics in Decomposing Litter in an Alpine Fir Forest
por: Li, Han, et al.
Publicado: (2016)

Antigenic characterization of influenza and SARS-CoV-2 viruses
por: Wang, Yang, et al.
Publicado: (2021)

How to Regenerate and Protect Desert Riparian Populus euphratica Forest in Arid Areas
por: Ling, Hongbo, et al.
Publicado: (2015)

Association of urban forest landscape characteristics with biomass and soil carbon stocks in Harbin City, Northeastern China
por: Lv, Hailiang, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_0tvd1b2t0l148iplc9mp9atdu5