Cargando…

Thermodynamic framework to assess low abundance DNA mutation detection by hybridization

The knowledge of genomic DNA variations in patient samples has a high and increasing value for human diagnostics in its broadest sense. Although many methods and sensors to detect or quantify these variations are available or under development, the number of underlying physico-chemical detection pri...

Descripción completa

Detalles Bibliográficos
Autores principales:	Willems, Hanny, Jacobs, An, Hadiwikarta, Wahyu Wijaya, Venken, Tom, Valkenborg, Dirk, Van Roy, Nadine, Vandesompele, Jo, Hooyberghs, Jef
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444680/ https://www.ncbi.nlm.nih.gov/pubmed/28542229 http://dx.doi.org/10.1371/journal.pone.0177384

Ejemplares similares

Targeted resequencing of HIV variants by microarray thermodynamics
por: Hadiwikarta, Wahyu W., et al.
Publicado: (2013)

Transient loading of CD34(+) hematopoietic progenitor cells with polystyrene nanoparticles
por: Deville, Sarah, et al.
Publicado: (2017)

Molecular drug susceptibility testing and strain typing of tuberculosis by DNA hybridization
por: Wood, Hillary N., et al.
Publicado: (2019)

Probing hybridization parameters from microarray experiments: nearest-neighbor model and beyond
por: Hadiwikarta, W. W., et al.
Publicado: (2012)

Towards Building a Quantitative Proteomics Toolbox in Precision Medicine: A Mini-Review
por: Correa Rojo, Alejandro, et al.
Publicado: (2021)

Determination of Variation Parameters as a Crucial Step in Designing TMT-Based Clinical Proteomics Experiments
por: Maes, Evelyne, et al.
Publicado: (2015)

Urinary Protein Biomarker Panel for the Diagnosis of Antibody-Mediated Rejection in Kidney Transplant Recipients
por: Mertens, Inge, et al.
Publicado: (2020)

Role of nanoparticle size and sialic acids in the distinct time-evolution profiles of nanoparticle uptake in hematopoietic progenitor cells and monocytes
por: Wathiong, Bart, et al.
Publicado: (2019)

Intravesicular Genomic DNA Enriched by Size Exclusion Chromatography Can Enhance Lung Cancer Oncogene Mutation Detection Sensitivity
por: Van Hoof, Rebekka, et al.
Publicado: (2022)

The effects of mismatches on hybridization in DNA microarrays: determination of nearest neighbor parameters
por: Hooyberghs, J., et al.
Publicado: (2009)

Thermodynamics
por: Jacobs, Patrick
Publicado: (2013)

Blocking Abundant RNA Transcripts by High-Affinity Oligonucleotides during Transcriptome Library Preparation
por: Everaert, Celine, et al.
Publicado: (2023)

Hybridization thermodynamics of NimbleGen Microarrays
por: Mueckstein, Ulrike, et al.
Publicado: (2010)

BRAIN 2.0: Time and Memory Complexity Improvements in the Algorithm for Calculating the Isotope Distribution
por: Dittwald, Piotr, et al.
Publicado: (2014)

Kinetics and thermodynamics of DNA hybridization on gold nanoparticles
por: Chen, Chunlai, et al.
Publicado: (2009)

Thermodynamic origin of instability in hybrid halide perovskites
por: Tenuta, E., et al.
Publicado: (2016)

Efficient siRNA selection using hybridization thermodynamics
por: Lu, Zhi John, et al.
Publicado: (2008)

Measuring thermodynamic details of DNA hybridization using fluorescence
por: You, Yong, et al.
Publicado: (2011)

Thermodynamic insights into 2-thiouridine-enhanced RNA hybridization
por: Larsen, Aaron T., et al.
Publicado: (2015)

Modeling the Solubility of Monoterpenoids with Hybrid and Predictive Thermodynamic Tools
por: Vilas-Boas, Sérgio M., et al.
Publicado: (2023)

Predicting the number of sulfur atoms in peptides and small proteins based on the observed aggregated isotope distribution
por: Claesen, Jürgen, et al.
Publicado: (2021)

qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
por: Hellemans, Jan, et al.
Publicado: (2007)

An integrated open framework for thermodynamics of reactions that combines accuracy and coverage
por: Noor, Elad, et al.
Publicado: (2012)

Aprotic Ionic Liquids: A Framework for Predicting Vaporization Thermodynamics
por: Verevkin, Sergey P., et al.
Publicado: (2022)

Multiplex Amplicon Quantification (MAQ), a fast and efficient method for the simultaneous detection of copy number alterations in neuroblastoma
por: Kumps, Candy, et al.
Publicado: (2010)

A Hybrid Hand-Crafted and Deep Neural Spatio-Temporal EEG Features Clustering Framework for Precise Emotional Status Recognition
por: Haq, Qazi Mazhar ul, et al.
Publicado: (2022)

Influence of thermodynamically unfavorable secondary structures on DNA hybridization kinetics
por: Hata, Hiroaki, et al.
Publicado: (2018)

Understanding off-target effects through hybridization kinetics and thermodynamics
por: Nazipova, Nafisa N., et al.
Publicado: (2019)

The emerging molecular pathogenesis of neuroblastoma: implications for improved risk assessment and targeted therapy
por: Van Roy, Nadine, et al.
Publicado: (2009)

Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models
por: Pandey, Vikash, et al.
Publicado: (2019)

MAIT Cells Come to the Rescue in Cancer Immunotherapy?
por: Lukasik, Zuzanna, et al.
Publicado: (2020)

A Bayesian Model Averaging Approach to the Quantification of Overlapping Peptides in an MALDI-TOF Mass Spectrum
por: Zhu, Qi, et al.
Publicado: (2011)

A kinetic and thermodynamic framework for the Azoarcus group I ribozyme reaction
por: Gleitsman, Kristin R., et al.
Publicado: (2014)

Cajuputs candy impairs Candida albicans and Streptococcus mutans mixed biofilm formation in vitro
por: Septiana, Siska, et al.
Publicado: (2020)

A Hybrid Framework for Understanding and Predicting Human Reaching Motions
por: Oguz, Ozgur S., et al.
Publicado: (2018)

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
por: Vandesompele, Jo, et al.
Publicado: (2002)

Envemind: Accurate Monoisotopic Mass Determination Based On Isotopic Envelope
por: Radziński, Piotr, et al.
Publicado: (2022)

A General Framework for Thermodynamically Consistent Parameterization and Efficient Sampling of Enzymatic Reactions
por: Saa, Pedro, et al.
Publicado: (2015)

The linear framework: using graph theory to reveal the algebra and thermodynamics of biomolecular systems
por: Nam, Kee-Myoung, et al.
Publicado: (2022)

A thermodynamic framework to identify apposite refrigerant former for hydrate-based applications
por: Dongre, Harshal J., et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_4vmv9ul1lrffo0af2q1cmgefrk