Parallel tiled Nussinov RNA folding loop nest generated using both dependence graph transitive closure and loop skewing

BACKGROUND: RNA secondary structure prediction is a compute intensive task that lies at the core of several search algorithms in bioinformatics. Fortunately, the RNA folding approaches, such as the Nussinov base pair maximization, involve mathematical operations over affine control loops whose itera...

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Detalles Bibliográficos
Autores principales: Palkowski, Marek, Bielecki, Wlodzimierz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5457642/
https://www.ncbi.nlm.nih.gov/pubmed/28578661
http://dx.doi.org/10.1186/s12859-017-1707-8

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5457642/
https://www.ncbi.nlm.nih.gov/pubmed/28578661
http://dx.doi.org/10.1186/s12859-017-1707-8

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