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Parallel tiled Nussinov RNA folding loop nest generated using both dependence graph transitive closure and loop skewing
BACKGROUND: RNA secondary structure prediction is a compute intensive task that lies at the core of several search algorithms in bioinformatics. Fortunately, the RNA folding approaches, such as the Nussinov base pair maximization, involve mathematical operations over affine control loops whose itera...
| Autores principales: | , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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BioMed Central
2017
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5457642/ https://www.ncbi.nlm.nih.gov/pubmed/28578661 http://dx.doi.org/10.1186/s12859-017-1707-8 |