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Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms
Computational modelling of metabolic networks has become an established procedure in the metabolic engineering of production strains. One key principle that is frequently used to guide the rational design of microbial cell factories is the stoichiometric coupling of growth and product synthesis, whi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5489714/ https://www.ncbi.nlm.nih.gov/pubmed/28639622 http://dx.doi.org/10.1038/ncomms15956 |
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author | von Kamp, Axel Klamt, Steffen |
author_facet | von Kamp, Axel Klamt, Steffen |
author_sort | von Kamp, Axel |
collection | PubMed |
description | Computational modelling of metabolic networks has become an established procedure in the metabolic engineering of production strains. One key principle that is frequently used to guide the rational design of microbial cell factories is the stoichiometric coupling of growth and product synthesis, which makes production of the desired compound obligatory for growth. Here we show that the coupling of growth and production is feasible under appropriate conditions for almost all metabolites in genome-scale metabolic models of five major production organisms. These organisms comprise eukaryotes and prokaryotes as well as heterotrophic and photoautotrophic organisms, which shows that growth coupling as a strain design principle has a wide applicability. The feasibility of coupling is proven by calculating appropriate reaction knockouts, which enforce the coupling behaviour. The study presented here is the most comprehensive computational investigation of growth-coupled production so far and its results are of fundamental importance for rational metabolic engineering. |
format | Online Article Text |
id | pubmed-5489714 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-54897142017-07-06 Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms von Kamp, Axel Klamt, Steffen Nat Commun Article Computational modelling of metabolic networks has become an established procedure in the metabolic engineering of production strains. One key principle that is frequently used to guide the rational design of microbial cell factories is the stoichiometric coupling of growth and product synthesis, which makes production of the desired compound obligatory for growth. Here we show that the coupling of growth and production is feasible under appropriate conditions for almost all metabolites in genome-scale metabolic models of five major production organisms. These organisms comprise eukaryotes and prokaryotes as well as heterotrophic and photoautotrophic organisms, which shows that growth coupling as a strain design principle has a wide applicability. The feasibility of coupling is proven by calculating appropriate reaction knockouts, which enforce the coupling behaviour. The study presented here is the most comprehensive computational investigation of growth-coupled production so far and its results are of fundamental importance for rational metabolic engineering. Nature Publishing Group 2017-06-22 /pmc/articles/PMC5489714/ /pubmed/28639622 http://dx.doi.org/10.1038/ncomms15956 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article von Kamp, Axel Klamt, Steffen Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms |
title | Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms |
title_full | Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms |
title_fullStr | Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms |
title_full_unstemmed | Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms |
title_short | Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms |
title_sort | growth-coupled overproduction is feasible for almost all metabolites in five major production organisms |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5489714/ https://www.ncbi.nlm.nih.gov/pubmed/28639622 http://dx.doi.org/10.1038/ncomms15956 |
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