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Avoidance of reporter assay distortions from fused dual reporters

Positioning test sequences between fused reporters permits monitoring of both translation levels and framing, before and after the test sequence. Many studies, including those on recoding such as productive ribosomal frameshifting and stop codon readthrough, use distinguishable luciferases or fluore...

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Detalles Bibliográficos
Autores principales: Loughran, Gary, Howard, Michael T., Firth, Andrew E., Atkins, John F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5513072/
https://www.ncbi.nlm.nih.gov/pubmed/28442579
http://dx.doi.org/10.1261/rna.061051.117
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author Loughran, Gary
Howard, Michael T.
Firth, Andrew E.
Atkins, John F.
author_facet Loughran, Gary
Howard, Michael T.
Firth, Andrew E.
Atkins, John F.
author_sort Loughran, Gary
collection PubMed
description Positioning test sequences between fused reporters permits monitoring of both translation levels and framing, before and after the test sequence. Many studies, including those on recoding such as productive ribosomal frameshifting and stop codon readthrough, use distinguishable luciferases or fluorescent proteins as reporters. Occasional distortions, due to test sequence product interference with the individual reporter activities or stabilities, are here shown to be avoidable by the introduction of tandem StopGo sequences (2A) flanking the test sequence. Using this new vector system (pSGDluc), we provide evidence for the use of a 3′ stem–loop stimulator for ACP2 readthrough, but failed to detect the reported VEGFA readthrough.
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spelling pubmed-55130722017-08-02 Avoidance of reporter assay distortions from fused dual reporters Loughran, Gary Howard, Michael T. Firth, Andrew E. Atkins, John F. RNA Method Positioning test sequences between fused reporters permits monitoring of both translation levels and framing, before and after the test sequence. Many studies, including those on recoding such as productive ribosomal frameshifting and stop codon readthrough, use distinguishable luciferases or fluorescent proteins as reporters. Occasional distortions, due to test sequence product interference with the individual reporter activities or stabilities, are here shown to be avoidable by the introduction of tandem StopGo sequences (2A) flanking the test sequence. Using this new vector system (pSGDluc), we provide evidence for the use of a 3′ stem–loop stimulator for ACP2 readthrough, but failed to detect the reported VEGFA readthrough. Cold Spring Harbor Laboratory Press 2017-08 /pmc/articles/PMC5513072/ /pubmed/28442579 http://dx.doi.org/10.1261/rna.061051.117 Text en © 2017 Loughran et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society http://creativecommons.org/licenses/by/4.0/ This article, published in RNA, is available under a Creative Commons License (Attribution 4.0 International), as described at http://creativecommons.org/licenses/by/4.0/.
spellingShingle Method
Loughran, Gary
Howard, Michael T.
Firth, Andrew E.
Atkins, John F.
Avoidance of reporter assay distortions from fused dual reporters
title Avoidance of reporter assay distortions from fused dual reporters
title_full Avoidance of reporter assay distortions from fused dual reporters
title_fullStr Avoidance of reporter assay distortions from fused dual reporters
title_full_unstemmed Avoidance of reporter assay distortions from fused dual reporters
title_short Avoidance of reporter assay distortions from fused dual reporters
title_sort avoidance of reporter assay distortions from fused dual reporters
topic Method
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5513072/
https://www.ncbi.nlm.nih.gov/pubmed/28442579
http://dx.doi.org/10.1261/rna.061051.117
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