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Avoidance of reporter assay distortions from fused dual reporters
Positioning test sequences between fused reporters permits monitoring of both translation levels and framing, before and after the test sequence. Many studies, including those on recoding such as productive ribosomal frameshifting and stop codon readthrough, use distinguishable luciferases or fluore...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5513072/ https://www.ncbi.nlm.nih.gov/pubmed/28442579 http://dx.doi.org/10.1261/rna.061051.117 |
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author | Loughran, Gary Howard, Michael T. Firth, Andrew E. Atkins, John F. |
author_facet | Loughran, Gary Howard, Michael T. Firth, Andrew E. Atkins, John F. |
author_sort | Loughran, Gary |
collection | PubMed |
description | Positioning test sequences between fused reporters permits monitoring of both translation levels and framing, before and after the test sequence. Many studies, including those on recoding such as productive ribosomal frameshifting and stop codon readthrough, use distinguishable luciferases or fluorescent proteins as reporters. Occasional distortions, due to test sequence product interference with the individual reporter activities or stabilities, are here shown to be avoidable by the introduction of tandem StopGo sequences (2A) flanking the test sequence. Using this new vector system (pSGDluc), we provide evidence for the use of a 3′ stem–loop stimulator for ACP2 readthrough, but failed to detect the reported VEGFA readthrough. |
format | Online Article Text |
id | pubmed-5513072 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Cold Spring Harbor Laboratory Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-55130722017-08-02 Avoidance of reporter assay distortions from fused dual reporters Loughran, Gary Howard, Michael T. Firth, Andrew E. Atkins, John F. RNA Method Positioning test sequences between fused reporters permits monitoring of both translation levels and framing, before and after the test sequence. Many studies, including those on recoding such as productive ribosomal frameshifting and stop codon readthrough, use distinguishable luciferases or fluorescent proteins as reporters. Occasional distortions, due to test sequence product interference with the individual reporter activities or stabilities, are here shown to be avoidable by the introduction of tandem StopGo sequences (2A) flanking the test sequence. Using this new vector system (pSGDluc), we provide evidence for the use of a 3′ stem–loop stimulator for ACP2 readthrough, but failed to detect the reported VEGFA readthrough. Cold Spring Harbor Laboratory Press 2017-08 /pmc/articles/PMC5513072/ /pubmed/28442579 http://dx.doi.org/10.1261/rna.061051.117 Text en © 2017 Loughran et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society http://creativecommons.org/licenses/by/4.0/ This article, published in RNA, is available under a Creative Commons License (Attribution 4.0 International), as described at http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Method Loughran, Gary Howard, Michael T. Firth, Andrew E. Atkins, John F. Avoidance of reporter assay distortions from fused dual reporters |
title | Avoidance of reporter assay distortions from fused dual reporters |
title_full | Avoidance of reporter assay distortions from fused dual reporters |
title_fullStr | Avoidance of reporter assay distortions from fused dual reporters |
title_full_unstemmed | Avoidance of reporter assay distortions from fused dual reporters |
title_short | Avoidance of reporter assay distortions from fused dual reporters |
title_sort | avoidance of reporter assay distortions from fused dual reporters |
topic | Method |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5513072/ https://www.ncbi.nlm.nih.gov/pubmed/28442579 http://dx.doi.org/10.1261/rna.061051.117 |
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