Cargando…

Prediction of Protein Hotspots from Whole Protein Sequences by a Random Projection Ensemble System

Hotspot residues are important in the determination of protein-protein interactions, and they always perform specific functions in biological processes. The determination of hotspot residues is by the commonly-used method of alanine scanning mutagenesis experiments, which is always costly and time c...

Descripción completa

Detalles Bibliográficos
Autores principales:	Jiang, Jinjian, Wang, Nian, Chen, Peng, Zheng, Chunhou, Wang, Bing
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5536031/ https://www.ncbi.nlm.nih.gov/pubmed/28718782 http://dx.doi.org/10.3390/ijms18071543

Ejemplares similares

DrugECs: An Ensemble System with Feature Subspaces for Accurate Drug-Target Interaction Prediction
por: Jiang, Jinjian, et al.
Publicado: (2017)

Hot spot prediction in protein-protein interactions by an ensemble system
por: Liu, Quanya, et al.
Publicado: (2018)

A Cascade Graph Convolutional Network for Predicting Protein–Ligand Binding Affinity
por: Shen, Huimin, et al.
Publicado: (2021)

Protein–Protein Interaction Hotspots Carved into Sequences
por: Ofran, Yanay, et al.
Publicado: (2007)

SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions
por: Zhang, Wen, et al.
Publicado: (2018)

Predicting Protein–Protein Interactions Based on Ensemble Learning-Based Model from Protein Sequence
por: Zhan, Xinke, et al.
Publicado: (2022)

Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis
por: You, Zhu-Hong, et al.
Publicado: (2013)

Semi-supervised prediction of protein interaction sites from unlabeled sample information
por: Wang, Ye, et al.
Publicado: (2019)

The whole is greater than its parts: ensembling improves protein contact prediction
por: Billings, Wendy M., et al.
Publicado: (2021)

HIV Protein Sequence Hotspots for Crosstalk with Host Hub Proteins
por: Sarmady, Mahdi, et al.
Publicado: (2011)

A Novel Ensemble Learning-Based Computational Method to Predict Protein-Protein Interactions from Protein Primary Sequences
por: Pan, Jie, et al.
Publicado: (2022)

PIPENN: protein interface prediction from sequence with an ensemble of neural nets
por: Stringer, Bas, et al.
Publicado: (2022)

virusMED: an atlas of hotspots of viral proteins
por: Zhang, HuiHui, et al.
Publicado: (2021)

Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana
por: Christian, Jan-Ole, et al.
Publicado: (2012)

Sequence and Structure Signatures of Cancer Mutation Hotspots in Protein Kinases
por: Dixit, Anshuman, et al.
Publicado: (2009)

Identification of Sequence Similarities among Isomerization Hotspots in Crystallin Proteins
por: Lyon, Yana A., et al.
Publicado: (2017)

Prediction of protein long-range contacts using an ensemble of genetic algorithm classifiers with sequence profile centers
por: Chen, Peng, et al.
Publicado: (2010)

Prediction of aptamer-protein interacting pairs using an ensemble classifier in combination with various protein sequence attributes
por: Zhang, Lina, et al.
Publicado: (2016)

Prediction of Self-Interacting Proteins from Protein Sequence Information Based on Random Projection Model and Fast Fourier Transform
por: Chen, Zhan-Heng, et al.
Publicado: (2019)

CPIELA: Computational Prediction of Plant Protein–Protein Interactions by Ensemble Learning Approach From Protein Sequences and Evolutionary Information
por: Li, Li-Ping, et al.
Publicado: (2022)

A Novel Feature Extraction Scheme with Ensemble Coding for Protein–Protein Interaction Prediction
por: Du, Xiuquan, et al.
Publicado: (2014)

Prediction of protein-protein interaction sites using an ensemble method
por: Deng, Lei, et al.
Publicado: (2009)

Sequence- and Interactome-Based Prediction of Viral Protein Hotspots Targeting Host Proteins: A Case Study for HIV Nef
por: Sarmady, Mahdi, et al.
Publicado: (2011)

A Transformer-Based Ensemble Framework for the Prediction of Protein–Protein Interaction Sites
por: Mou, Minjie, et al.
Publicado: (2023)

DCSE:Double-Channel-Siamese-Ensemble model for protein protein interaction prediction
por: Chen, Wenqi, et al.
Publicado: (2022)

Hierarchical Ensemble Methods for Protein Function Prediction
por: Valentini, Giorgio
Publicado: (2014)

Ensemble Learning with Supervised Methods Based on Large-Scale Protein Language Models for Protein Mutation Effects Prediction
por: Qu, Yang, et al.
Publicado: (2023)

Protein ligand-specific binding residue predictions by an ensemble classifier
por: Hu, Xiuzhen, et al.
Publicado: (2016)

Climate change hotspots in the CMIP5 global climate model ensemble
por: Diffenbaugh, Noah S., et al.
Publicado: (2012)

Sequencing refractory regions in bird genomes are hotspots for accelerated protein evolution
por: Huttener, R., et al.
Publicado: (2021)

Large-scale protein function prediction using heterogeneous ensembles
por: Wang, Linhua, et al.
Publicado: (2018)

AutoPPI: An Ensemble of Deep Autoencoders for Protein–Protein Interaction Prediction
por: Czibula, Gabriela, et al.
Publicado: (2021)

An ensemble approach for large-scale identification of protein-protein interactions using the alignments of multiple sequences
por: Wang, Lei, et al.
Publicado: (2016)

Fast Constrained Spectral Clustering and Cluster Ensemble with Random Projection
por: Liu, Wenfen, et al.
Publicado: (2017)

PPCheck: A Webserver for the Quantitative Analysis of Protein–Protein Interfaces and Prediction of Residue Hotspots
por: Sukhwal, Anshul, et al.
Publicado: (2015)

Sequence-ensemble-function relationships for disordered proteins in live cells
por: Emenecker, Ryan J., et al.
Publicado: (2023)

Sequence-ensemble-function relationships for disordered proteins in live cells
por: Holehouse, Alex, et al.
Publicado: (2023)

An Ensemble Classifier to Predict Protein–Protein Interactions by Combining PSSM-based Evolutionary Information with Local Binary Pattern Model
por: Li, Yang, et al.
Publicado: (2019)

Protein phase separation hotspots at the presynapse
por: Lautenschläger, Janin
Publicado: (2022)

RPI-SE: a stacking ensemble learning framework for ncRNA-protein interactions prediction using sequence information
por: Yi, Hai-Cheng, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_efrtfj1a5hreeo5ar1o30vrngn