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Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors
Gene regulatory networks are ultimately encoded by the sequence-specific binding of (TFs) to short DNA segments. Although it is customary to represent the binding specificity of a TF by a position-specific weight matrix (PSWM), which assumes each position within a site contributes independently to t...
Autores principales: | Omidi, Saeed, Zavolan, Mihaela, Pachkov, Mikhail, Breda, Jeremie, Berger, Severin, van Nimwegen, Erik |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5550003/ https://www.ncbi.nlm.nih.gov/pubmed/28753602 http://dx.doi.org/10.1371/journal.pcbi.1005176 |
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