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CTD(2) Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network

The Cancer Target Discovery and Development (CTD(2)) Network aims to use functional genomics to accelerate the translation of high-throughput and high-content genomic and small-molecule data towards use in precision oncology. As part of this goal, and to share its conclusions with the research commu...

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Autores principales: Aksoy, Bülent Arman, Dančík, Vlado, Smith, Kenneth, Mazerik, Jessica N., Ji, Zhou, Gross, Benjamin, Nikolova, Olga, Jaber, Nadia, Califano, Andrea, Schreiber, Stuart L., Gerhard, Daniela S., Hermida, Leandro C., Jagu, Subhashini, Sander, Chris, Floratos, Aris, Clemons, Paul A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5569694/
https://www.ncbi.nlm.nih.gov/pubmed/29220450
http://dx.doi.org/10.1093/database/bax054
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author Aksoy, Bülent Arman
Dančík, Vlado
Smith, Kenneth
Mazerik, Jessica N.
Ji, Zhou
Gross, Benjamin
Nikolova, Olga
Jaber, Nadia
Califano, Andrea
Schreiber, Stuart L.
Gerhard, Daniela S.
Hermida, Leandro C.
Jagu, Subhashini
Sander, Chris
Floratos, Aris
Clemons, Paul A.
author_facet Aksoy, Bülent Arman
Dančík, Vlado
Smith, Kenneth
Mazerik, Jessica N.
Ji, Zhou
Gross, Benjamin
Nikolova, Olga
Jaber, Nadia
Califano, Andrea
Schreiber, Stuart L.
Gerhard, Daniela S.
Hermida, Leandro C.
Jagu, Subhashini
Sander, Chris
Floratos, Aris
Clemons, Paul A.
author_sort Aksoy, Bülent Arman
collection PubMed
description The Cancer Target Discovery and Development (CTD(2)) Network aims to use functional genomics to accelerate the translation of high-throughput and high-content genomic and small-molecule data towards use in precision oncology. As part of this goal, and to share its conclusions with the research community, the Network developed the ‘CTD(2) Dashboard’ [https://ctd2-dashboard.nci.nih.gov/], which compiles CTD(2) Network-generated conclusions, termed ‘observations’, associated with experimental entities, collected by its member groups (‘Centers’). Any researcher interested in learning about a given gene, protein, or compound (a ‘subject’) studied by the Network can come to the CTD(2) Dashboard to quickly and easily find, review, and understand Network-generated experimental results. In particular, the Dashboard allows visitors to connect experiments about the same target, biomarker, etc., carried out by multiple Centers in the Network. The Dashboard’s unique knowledge representation allows information to be compiled around a subject, so as to become greater than the sum of the individual contributions. The CTD(2) Network has broadly defined levels of validation for evidence (‘Tiers’) pertaining to a particular finding, and the CTD(2) Dashboard uses these Tiers to indicate the extent to which results have been validated. Researchers can use the Network’s insights and tools to develop a new hypothesis or confirm existing hypotheses, in turn advancing the findings towards clinical applications. Database URL: https://ctd2-dashboard.nci.nih.gov/
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spelling pubmed-55696942017-08-29 CTD(2) Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network Aksoy, Bülent Arman Dančík, Vlado Smith, Kenneth Mazerik, Jessica N. Ji, Zhou Gross, Benjamin Nikolova, Olga Jaber, Nadia Califano, Andrea Schreiber, Stuart L. Gerhard, Daniela S. Hermida, Leandro C. Jagu, Subhashini Sander, Chris Floratos, Aris Clemons, Paul A. Database (Oxford) Original Article The Cancer Target Discovery and Development (CTD(2)) Network aims to use functional genomics to accelerate the translation of high-throughput and high-content genomic and small-molecule data towards use in precision oncology. As part of this goal, and to share its conclusions with the research community, the Network developed the ‘CTD(2) Dashboard’ [https://ctd2-dashboard.nci.nih.gov/], which compiles CTD(2) Network-generated conclusions, termed ‘observations’, associated with experimental entities, collected by its member groups (‘Centers’). Any researcher interested in learning about a given gene, protein, or compound (a ‘subject’) studied by the Network can come to the CTD(2) Dashboard to quickly and easily find, review, and understand Network-generated experimental results. In particular, the Dashboard allows visitors to connect experiments about the same target, biomarker, etc., carried out by multiple Centers in the Network. The Dashboard’s unique knowledge representation allows information to be compiled around a subject, so as to become greater than the sum of the individual contributions. The CTD(2) Network has broadly defined levels of validation for evidence (‘Tiers’) pertaining to a particular finding, and the CTD(2) Dashboard uses these Tiers to indicate the extent to which results have been validated. Researchers can use the Network’s insights and tools to develop a new hypothesis or confirm existing hypotheses, in turn advancing the findings towards clinical applications. Database URL: https://ctd2-dashboard.nci.nih.gov/ Oxford University Press 2017-08-08 /pmc/articles/PMC5569694/ /pubmed/29220450 http://dx.doi.org/10.1093/database/bax054 Text en © The Author(s) 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Aksoy, Bülent Arman
Dančík, Vlado
Smith, Kenneth
Mazerik, Jessica N.
Ji, Zhou
Gross, Benjamin
Nikolova, Olga
Jaber, Nadia
Califano, Andrea
Schreiber, Stuart L.
Gerhard, Daniela S.
Hermida, Leandro C.
Jagu, Subhashini
Sander, Chris
Floratos, Aris
Clemons, Paul A.
CTD(2) Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network
title CTD(2) Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network
title_full CTD(2) Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network
title_fullStr CTD(2) Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network
title_full_unstemmed CTD(2) Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network
title_short CTD(2) Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network
title_sort ctd(2) dashboard: a searchable web interface to connect validated results from the cancer target discovery and development network
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5569694/
https://www.ncbi.nlm.nih.gov/pubmed/29220450
http://dx.doi.org/10.1093/database/bax054
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