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Construction and in vivo assembly of a catalytically proficient and hyperthermostable de novo enzyme

Although catalytic mechanisms in natural enzymes are well understood, achieving the diverse palette of reaction chemistries in re-engineered native proteins has proved challenging. Wholesale modification of natural enzymes is potentially compromised by their intrinsic complexity, which often obscure...

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Autores principales: Watkins, Daniel W., Jenkins, Jonathan M. X., Grayson, Katie J., Wood, Nicola, Steventon, Jack W., Le Vay, Kristian K., Goodwin, Matthew I., Mullen, Anna S., Bailey, Henry J., Crump, Matthew P., MacMillan, Fraser, Mulholland, Adrian J., Cameron, Gus, Sessions, Richard B., Mann, Stephen, Anderson, J. L. Ross
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5572459/
https://www.ncbi.nlm.nih.gov/pubmed/28842561
http://dx.doi.org/10.1038/s41467-017-00541-4
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author Watkins, Daniel W.
Jenkins, Jonathan M. X.
Grayson, Katie J.
Wood, Nicola
Steventon, Jack W.
Le Vay, Kristian K.
Goodwin, Matthew I.
Mullen, Anna S.
Bailey, Henry J.
Crump, Matthew P.
MacMillan, Fraser
Mulholland, Adrian J.
Cameron, Gus
Sessions, Richard B.
Mann, Stephen
Anderson, J. L. Ross
author_facet Watkins, Daniel W.
Jenkins, Jonathan M. X.
Grayson, Katie J.
Wood, Nicola
Steventon, Jack W.
Le Vay, Kristian K.
Goodwin, Matthew I.
Mullen, Anna S.
Bailey, Henry J.
Crump, Matthew P.
MacMillan, Fraser
Mulholland, Adrian J.
Cameron, Gus
Sessions, Richard B.
Mann, Stephen
Anderson, J. L. Ross
author_sort Watkins, Daniel W.
collection PubMed
description Although catalytic mechanisms in natural enzymes are well understood, achieving the diverse palette of reaction chemistries in re-engineered native proteins has proved challenging. Wholesale modification of natural enzymes is potentially compromised by their intrinsic complexity, which often obscures the underlying principles governing biocatalytic efficiency. The maquette approach can circumvent this complexity by combining a robust de novo designed chassis with a design process that avoids atomistic mimicry of natural proteins. Here, we apply this method to the construction of a highly efficient, promiscuous, and thermostable artificial enzyme that catalyzes a diverse array of substrate oxidations coupled to the reduction of H(2)O(2). The maquette exhibits kinetics that match and even surpass those of certain natural peroxidases, retains its activity at elevated temperature and in the presence of organic solvents, and provides a simple platform for interrogating catalytic intermediates common to natural heme-containing enzymes.
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spelling pubmed-55724592017-09-01 Construction and in vivo assembly of a catalytically proficient and hyperthermostable de novo enzyme Watkins, Daniel W. Jenkins, Jonathan M. X. Grayson, Katie J. Wood, Nicola Steventon, Jack W. Le Vay, Kristian K. Goodwin, Matthew I. Mullen, Anna S. Bailey, Henry J. Crump, Matthew P. MacMillan, Fraser Mulholland, Adrian J. Cameron, Gus Sessions, Richard B. Mann, Stephen Anderson, J. L. Ross Nat Commun Article Although catalytic mechanisms in natural enzymes are well understood, achieving the diverse palette of reaction chemistries in re-engineered native proteins has proved challenging. Wholesale modification of natural enzymes is potentially compromised by their intrinsic complexity, which often obscures the underlying principles governing biocatalytic efficiency. The maquette approach can circumvent this complexity by combining a robust de novo designed chassis with a design process that avoids atomistic mimicry of natural proteins. Here, we apply this method to the construction of a highly efficient, promiscuous, and thermostable artificial enzyme that catalyzes a diverse array of substrate oxidations coupled to the reduction of H(2)O(2). The maquette exhibits kinetics that match and even surpass those of certain natural peroxidases, retains its activity at elevated temperature and in the presence of organic solvents, and provides a simple platform for interrogating catalytic intermediates common to natural heme-containing enzymes. Nature Publishing Group UK 2017-08-25 /pmc/articles/PMC5572459/ /pubmed/28842561 http://dx.doi.org/10.1038/s41467-017-00541-4 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Watkins, Daniel W.
Jenkins, Jonathan M. X.
Grayson, Katie J.
Wood, Nicola
Steventon, Jack W.
Le Vay, Kristian K.
Goodwin, Matthew I.
Mullen, Anna S.
Bailey, Henry J.
Crump, Matthew P.
MacMillan, Fraser
Mulholland, Adrian J.
Cameron, Gus
Sessions, Richard B.
Mann, Stephen
Anderson, J. L. Ross
Construction and in vivo assembly of a catalytically proficient and hyperthermostable de novo enzyme
title Construction and in vivo assembly of a catalytically proficient and hyperthermostable de novo enzyme
title_full Construction and in vivo assembly of a catalytically proficient and hyperthermostable de novo enzyme
title_fullStr Construction and in vivo assembly of a catalytically proficient and hyperthermostable de novo enzyme
title_full_unstemmed Construction and in vivo assembly of a catalytically proficient and hyperthermostable de novo enzyme
title_short Construction and in vivo assembly of a catalytically proficient and hyperthermostable de novo enzyme
title_sort construction and in vivo assembly of a catalytically proficient and hyperthermostable de novo enzyme
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5572459/
https://www.ncbi.nlm.nih.gov/pubmed/28842561
http://dx.doi.org/10.1038/s41467-017-00541-4
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