BAT: Bisulfite Analysis Toolkit: BAT is a toolkit to analyze DNA methylation sequencing data accurately and reproducibly. It covers standard processing and analysis steps from raw read mapping up to annotation data integration and calculation of correlating DMRs.

Here, we present BAT, a modular bisulfite analysis toolkit, that facilitates the analysis of bisulfite sequencing data. It covers the essential analysis steps of read alignment, quality control, extraction of methylation information, and calling of differentially methylated regions, as well as biolo...

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Detalles Bibliográficos
Autores principales: Kretzmer, Helene, Otto, Christian, Hoffmann, Steve
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2017
Materias:
Software Tool Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5590080/
https://www.ncbi.nlm.nih.gov/pubmed/28979767
http://dx.doi.org/10.12688/f1000research.12302.1

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5590080/
https://www.ncbi.nlm.nih.gov/pubmed/28979767
http://dx.doi.org/10.12688/f1000research.12302.1

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