Cargando…

Label-free quantitative (1)H NMR spectroscopy to study low-affinity ligand–protein interactions in solution: A contribution to the mechanism of polyphenol-mediated astringency

Nuclear magnetic resonance (NMR) spectroscopy is well-established in assessing the binding affinity between low molecular weight ligands and proteins. However, conventional NMR-based binding assays are often limited to small proteins of high purity and may require elaborate isotopic labeling of one...

Descripción completa

Detalles Bibliográficos
Autores principales: Delius, Judith, Frank, Oliver, Hofmann, Thomas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5590944/
https://www.ncbi.nlm.nih.gov/pubmed/28886151
http://dx.doi.org/10.1371/journal.pone.0184487
_version_ 1783262618870349824
author Delius, Judith
Frank, Oliver
Hofmann, Thomas
author_facet Delius, Judith
Frank, Oliver
Hofmann, Thomas
author_sort Delius, Judith
collection PubMed
description Nuclear magnetic resonance (NMR) spectroscopy is well-established in assessing the binding affinity between low molecular weight ligands and proteins. However, conventional NMR-based binding assays are often limited to small proteins of high purity and may require elaborate isotopic labeling of one of the potential binding partners. As protein–polyphenol complexation is assumed to be a key event in polyphenol-mediated oral astringency, here we introduce a label-free, ligand-focused (1)H NMR titration assay to estimate binding affinities and characterize soluble complex formation between proteins and low molecular weight polyphenols. The method makes use of the effects of NMR line broadening due to protein–ligand interactions and quantitation of the non-bound ligand at varying protein concentrations by quantitative (1)H NMR spectroscopy (qHNMR) using electronic reference to access in vivo concentration (ERETIC 2). This technique is applied to assess the interaction kinetics of selected astringent tasting polyphenols and purified mucin, a major lubricating glycoprotein of human saliva, as well as human whole saliva. The protein affinity values (BC(50)) obtained are subsequently correlated with the intrinsic mouth-puckering, astringent oral sensation imparted by these compounds. The quantitative NMR method is further exploited to study the effect of carboxymethyl cellulose, a candidate “anti-astringent” protein binding antagonist, on the polyphenol–protein interaction. Consequently, the NMR approach presented here proves to be a versatile tool to study the interactions between proteins and low-affinity ligands in solution and may find promising applications in the discovery of bioactives.
format Online
Article
Text
id pubmed-5590944
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-55909442017-09-15 Label-free quantitative (1)H NMR spectroscopy to study low-affinity ligand–protein interactions in solution: A contribution to the mechanism of polyphenol-mediated astringency Delius, Judith Frank, Oliver Hofmann, Thomas PLoS One Research Article Nuclear magnetic resonance (NMR) spectroscopy is well-established in assessing the binding affinity between low molecular weight ligands and proteins. However, conventional NMR-based binding assays are often limited to small proteins of high purity and may require elaborate isotopic labeling of one of the potential binding partners. As protein–polyphenol complexation is assumed to be a key event in polyphenol-mediated oral astringency, here we introduce a label-free, ligand-focused (1)H NMR titration assay to estimate binding affinities and characterize soluble complex formation between proteins and low molecular weight polyphenols. The method makes use of the effects of NMR line broadening due to protein–ligand interactions and quantitation of the non-bound ligand at varying protein concentrations by quantitative (1)H NMR spectroscopy (qHNMR) using electronic reference to access in vivo concentration (ERETIC 2). This technique is applied to assess the interaction kinetics of selected astringent tasting polyphenols and purified mucin, a major lubricating glycoprotein of human saliva, as well as human whole saliva. The protein affinity values (BC(50)) obtained are subsequently correlated with the intrinsic mouth-puckering, astringent oral sensation imparted by these compounds. The quantitative NMR method is further exploited to study the effect of carboxymethyl cellulose, a candidate “anti-astringent” protein binding antagonist, on the polyphenol–protein interaction. Consequently, the NMR approach presented here proves to be a versatile tool to study the interactions between proteins and low-affinity ligands in solution and may find promising applications in the discovery of bioactives. Public Library of Science 2017-09-08 /pmc/articles/PMC5590944/ /pubmed/28886151 http://dx.doi.org/10.1371/journal.pone.0184487 Text en © 2017 Delius et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Delius, Judith
Frank, Oliver
Hofmann, Thomas
Label-free quantitative (1)H NMR spectroscopy to study low-affinity ligand–protein interactions in solution: A contribution to the mechanism of polyphenol-mediated astringency
title Label-free quantitative (1)H NMR spectroscopy to study low-affinity ligand–protein interactions in solution: A contribution to the mechanism of polyphenol-mediated astringency
title_full Label-free quantitative (1)H NMR spectroscopy to study low-affinity ligand–protein interactions in solution: A contribution to the mechanism of polyphenol-mediated astringency
title_fullStr Label-free quantitative (1)H NMR spectroscopy to study low-affinity ligand–protein interactions in solution: A contribution to the mechanism of polyphenol-mediated astringency
title_full_unstemmed Label-free quantitative (1)H NMR spectroscopy to study low-affinity ligand–protein interactions in solution: A contribution to the mechanism of polyphenol-mediated astringency
title_short Label-free quantitative (1)H NMR spectroscopy to study low-affinity ligand–protein interactions in solution: A contribution to the mechanism of polyphenol-mediated astringency
title_sort label-free quantitative (1)h nmr spectroscopy to study low-affinity ligand–protein interactions in solution: a contribution to the mechanism of polyphenol-mediated astringency
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5590944/
https://www.ncbi.nlm.nih.gov/pubmed/28886151
http://dx.doi.org/10.1371/journal.pone.0184487
work_keys_str_mv AT deliusjudith labelfreequantitative1hnmrspectroscopytostudylowaffinityligandproteininteractionsinsolutionacontributiontothemechanismofpolyphenolmediatedastringency
AT frankoliver labelfreequantitative1hnmrspectroscopytostudylowaffinityligandproteininteractionsinsolutionacontributiontothemechanismofpolyphenolmediatedastringency
AT hofmannthomas labelfreequantitative1hnmrspectroscopytostudylowaffinityligandproteininteractionsinsolutionacontributiontothemechanismofpolyphenolmediatedastringency