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The mechano-sensing role of the unique SH3 insertion in plakin domains revealed by Molecular Dynamics simulations

The plakin family of proteins, important actors in cross-linking force-bearing structures in the cell, contain a curious SH3 domain insertion in their chain of spectrin repeats (SRs). While SH3 domains are known to mediate protein-protein interactions, here, its canonical binding site is autoinhibit...

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Autores principales: Daday, Csaba, Kolšek, Katra, Gräter, Frauke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5601466/
https://www.ncbi.nlm.nih.gov/pubmed/28916774
http://dx.doi.org/10.1038/s41598-017-11017-2
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author Daday, Csaba
Kolšek, Katra
Gräter, Frauke
author_facet Daday, Csaba
Kolšek, Katra
Gräter, Frauke
author_sort Daday, Csaba
collection PubMed
description The plakin family of proteins, important actors in cross-linking force-bearing structures in the cell, contain a curious SH3 domain insertion in their chain of spectrin repeats (SRs). While SH3 domains are known to mediate protein-protein interactions, here, its canonical binding site is autoinhibited by the preceding SR. Under force, however, this SH3 domain could be released, and possibly launch a signaling cascade. We performed large-scale force-probe molecular dynamics simulations, across two orders of magnitude of loading rates, to test this hypothesis, on two prominent members of the plakin family: desmoplakin and plectin, obligate proteins at desmosomes and hemidesmosomes, respectively. Our simulations show that force unravels the SRs and abolishes the autoinhibition of the SH3 domain, an event well separated from the unfolding of this domain. The SH3 domain is free and fully functional for a significant portion of the unfolding trajectories. The rupture forces required for the two proteins significantly decrease when the SH3 domain is removed, which implies that the SH3 domain also stabilizes this junction. Our results persist across all simulations, and support a force-sensing as well as a stabilizing role of the unique SH3 insertion, putting forward this protein family as a new class of mechano-sensors.
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spelling pubmed-56014662017-09-20 The mechano-sensing role of the unique SH3 insertion in plakin domains revealed by Molecular Dynamics simulations Daday, Csaba Kolšek, Katra Gräter, Frauke Sci Rep Article The plakin family of proteins, important actors in cross-linking force-bearing structures in the cell, contain a curious SH3 domain insertion in their chain of spectrin repeats (SRs). While SH3 domains are known to mediate protein-protein interactions, here, its canonical binding site is autoinhibited by the preceding SR. Under force, however, this SH3 domain could be released, and possibly launch a signaling cascade. We performed large-scale force-probe molecular dynamics simulations, across two orders of magnitude of loading rates, to test this hypothesis, on two prominent members of the plakin family: desmoplakin and plectin, obligate proteins at desmosomes and hemidesmosomes, respectively. Our simulations show that force unravels the SRs and abolishes the autoinhibition of the SH3 domain, an event well separated from the unfolding of this domain. The SH3 domain is free and fully functional for a significant portion of the unfolding trajectories. The rupture forces required for the two proteins significantly decrease when the SH3 domain is removed, which implies that the SH3 domain also stabilizes this junction. Our results persist across all simulations, and support a force-sensing as well as a stabilizing role of the unique SH3 insertion, putting forward this protein family as a new class of mechano-sensors. Nature Publishing Group UK 2017-09-15 /pmc/articles/PMC5601466/ /pubmed/28916774 http://dx.doi.org/10.1038/s41598-017-11017-2 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Daday, Csaba
Kolšek, Katra
Gräter, Frauke
The mechano-sensing role of the unique SH3 insertion in plakin domains revealed by Molecular Dynamics simulations
title The mechano-sensing role of the unique SH3 insertion in plakin domains revealed by Molecular Dynamics simulations
title_full The mechano-sensing role of the unique SH3 insertion in plakin domains revealed by Molecular Dynamics simulations
title_fullStr The mechano-sensing role of the unique SH3 insertion in plakin domains revealed by Molecular Dynamics simulations
title_full_unstemmed The mechano-sensing role of the unique SH3 insertion in plakin domains revealed by Molecular Dynamics simulations
title_short The mechano-sensing role of the unique SH3 insertion in plakin domains revealed by Molecular Dynamics simulations
title_sort mechano-sensing role of the unique sh3 insertion in plakin domains revealed by molecular dynamics simulations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5601466/
https://www.ncbi.nlm.nih.gov/pubmed/28916774
http://dx.doi.org/10.1038/s41598-017-11017-2
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