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Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies

Spatial bias continues to be a major challenge in high-throughput screening technologies. Its successful detection and elimination are critical for identifying the most promising drug candidates. Here, we examine experimental small molecule assays from the popular ChemBank database and show that scr...

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Detalles Bibliográficos
Autores principales: Mazoure, Bogdan, Nadon, Robert, Makarenkov, Vladimir
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5607347/
https://www.ncbi.nlm.nih.gov/pubmed/28931934
http://dx.doi.org/10.1038/s41598-017-11940-4
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author Mazoure, Bogdan
Nadon, Robert
Makarenkov, Vladimir
author_facet Mazoure, Bogdan
Nadon, Robert
Makarenkov, Vladimir
author_sort Mazoure, Bogdan
collection PubMed
description Spatial bias continues to be a major challenge in high-throughput screening technologies. Its successful detection and elimination are critical for identifying the most promising drug candidates. Here, we examine experimental small molecule assays from the popular ChemBank database and show that screening data are widely affected by both assay-specific and plate-specific spatial biases. Importantly, the bias affecting screening data can fit an additive or multiplicative model. We show that the use of appropriate statistical methods is essential for improving the quality of experimental screening data. The presented methodology can be recommended for the analysis of current and next-generation screening data.
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spelling pubmed-56073472017-10-04 Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies Mazoure, Bogdan Nadon, Robert Makarenkov, Vladimir Sci Rep Article Spatial bias continues to be a major challenge in high-throughput screening technologies. Its successful detection and elimination are critical for identifying the most promising drug candidates. Here, we examine experimental small molecule assays from the popular ChemBank database and show that screening data are widely affected by both assay-specific and plate-specific spatial biases. Importantly, the bias affecting screening data can fit an additive or multiplicative model. We show that the use of appropriate statistical methods is essential for improving the quality of experimental screening data. The presented methodology can be recommended for the analysis of current and next-generation screening data. Nature Publishing Group UK 2017-09-20 /pmc/articles/PMC5607347/ /pubmed/28931934 http://dx.doi.org/10.1038/s41598-017-11940-4 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Mazoure, Bogdan
Nadon, Robert
Makarenkov, Vladimir
Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies
title Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies
title_full Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies
title_fullStr Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies
title_full_unstemmed Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies
title_short Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies
title_sort identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5607347/
https://www.ncbi.nlm.nih.gov/pubmed/28931934
http://dx.doi.org/10.1038/s41598-017-11940-4
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