Cargando…
Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies
Spatial bias continues to be a major challenge in high-throughput screening technologies. Its successful detection and elimination are critical for identifying the most promising drug candidates. Here, we examine experimental small molecule assays from the popular ChemBank database and show that scr...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5607347/ https://www.ncbi.nlm.nih.gov/pubmed/28931934 http://dx.doi.org/10.1038/s41598-017-11940-4 |
_version_ | 1783265280547356672 |
---|---|
author | Mazoure, Bogdan Nadon, Robert Makarenkov, Vladimir |
author_facet | Mazoure, Bogdan Nadon, Robert Makarenkov, Vladimir |
author_sort | Mazoure, Bogdan |
collection | PubMed |
description | Spatial bias continues to be a major challenge in high-throughput screening technologies. Its successful detection and elimination are critical for identifying the most promising drug candidates. Here, we examine experimental small molecule assays from the popular ChemBank database and show that screening data are widely affected by both assay-specific and plate-specific spatial biases. Importantly, the bias affecting screening data can fit an additive or multiplicative model. We show that the use of appropriate statistical methods is essential for improving the quality of experimental screening data. The presented methodology can be recommended for the analysis of current and next-generation screening data. |
format | Online Article Text |
id | pubmed-5607347 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-56073472017-10-04 Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies Mazoure, Bogdan Nadon, Robert Makarenkov, Vladimir Sci Rep Article Spatial bias continues to be a major challenge in high-throughput screening technologies. Its successful detection and elimination are critical for identifying the most promising drug candidates. Here, we examine experimental small molecule assays from the popular ChemBank database and show that screening data are widely affected by both assay-specific and plate-specific spatial biases. Importantly, the bias affecting screening data can fit an additive or multiplicative model. We show that the use of appropriate statistical methods is essential for improving the quality of experimental screening data. The presented methodology can be recommended for the analysis of current and next-generation screening data. Nature Publishing Group UK 2017-09-20 /pmc/articles/PMC5607347/ /pubmed/28931934 http://dx.doi.org/10.1038/s41598-017-11940-4 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Mazoure, Bogdan Nadon, Robert Makarenkov, Vladimir Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies |
title | Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies |
title_full | Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies |
title_fullStr | Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies |
title_full_unstemmed | Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies |
title_short | Identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies |
title_sort | identification and correction of spatial bias are essential for obtaining quality data in high-throughput screening technologies |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5607347/ https://www.ncbi.nlm.nih.gov/pubmed/28931934 http://dx.doi.org/10.1038/s41598-017-11940-4 |
work_keys_str_mv | AT mazourebogdan identificationandcorrectionofspatialbiasareessentialforobtainingqualitydatainhighthroughputscreeningtechnologies AT nadonrobert identificationandcorrectionofspatialbiasareessentialforobtainingqualitydatainhighthroughputscreeningtechnologies AT makarenkovvladimir identificationandcorrectionofspatialbiasareessentialforobtainingqualitydatainhighthroughputscreeningtechnologies |