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Stochastic principles governing alternative splicing of RNA
The dominance of the major transcript isoform relative to other isoforms from the same gene generated by alternative splicing (AS) is essential to the maintenance of normal cellular physiology. However, the underlying principles that determine such dominance remain unknown. Here, we analyzed the phy...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5614656/ https://www.ncbi.nlm.nih.gov/pubmed/28910283 http://dx.doi.org/10.1371/journal.pcbi.1005761 |
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author | Hu, Jianfei Boritz, Eli Wylie, William Douek, Daniel C. |
author_facet | Hu, Jianfei Boritz, Eli Wylie, William Douek, Daniel C. |
author_sort | Hu, Jianfei |
collection | PubMed |
description | The dominance of the major transcript isoform relative to other isoforms from the same gene generated by alternative splicing (AS) is essential to the maintenance of normal cellular physiology. However, the underlying principles that determine such dominance remain unknown. Here, we analyzed the physical AS process and found that it can be modeled by a stochastic minimization process, which causes the scaled expression levels of all transcript isoforms to follow the same Weibull extreme value distribution. Surprisingly, we also found a simple equation to describe the median frequency of transcript isoforms of different dominance. This two-parameter Weibull model provides the statistical distribution of all isoforms of all transcribed genes, and reveals that previously unexplained observations concerning relative isoform expression derive from these principles. |
format | Online Article Text |
id | pubmed-5614656 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-56146562017-10-09 Stochastic principles governing alternative splicing of RNA Hu, Jianfei Boritz, Eli Wylie, William Douek, Daniel C. PLoS Comput Biol Research Article The dominance of the major transcript isoform relative to other isoforms from the same gene generated by alternative splicing (AS) is essential to the maintenance of normal cellular physiology. However, the underlying principles that determine such dominance remain unknown. Here, we analyzed the physical AS process and found that it can be modeled by a stochastic minimization process, which causes the scaled expression levels of all transcript isoforms to follow the same Weibull extreme value distribution. Surprisingly, we also found a simple equation to describe the median frequency of transcript isoforms of different dominance. This two-parameter Weibull model provides the statistical distribution of all isoforms of all transcribed genes, and reveals that previously unexplained observations concerning relative isoform expression derive from these principles. Public Library of Science 2017-09-14 /pmc/articles/PMC5614656/ /pubmed/28910283 http://dx.doi.org/10.1371/journal.pcbi.1005761 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication. |
spellingShingle | Research Article Hu, Jianfei Boritz, Eli Wylie, William Douek, Daniel C. Stochastic principles governing alternative splicing of RNA |
title | Stochastic principles governing alternative splicing of RNA |
title_full | Stochastic principles governing alternative splicing of RNA |
title_fullStr | Stochastic principles governing alternative splicing of RNA |
title_full_unstemmed | Stochastic principles governing alternative splicing of RNA |
title_short | Stochastic principles governing alternative splicing of RNA |
title_sort | stochastic principles governing alternative splicing of rna |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5614656/ https://www.ncbi.nlm.nih.gov/pubmed/28910283 http://dx.doi.org/10.1371/journal.pcbi.1005761 |
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