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Stochastic principles governing alternative splicing of RNA

The dominance of the major transcript isoform relative to other isoforms from the same gene generated by alternative splicing (AS) is essential to the maintenance of normal cellular physiology. However, the underlying principles that determine such dominance remain unknown. Here, we analyzed the phy...

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Detalles Bibliográficos
Autores principales: Hu, Jianfei, Boritz, Eli, Wylie, William, Douek, Daniel C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5614656/
https://www.ncbi.nlm.nih.gov/pubmed/28910283
http://dx.doi.org/10.1371/journal.pcbi.1005761
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author Hu, Jianfei
Boritz, Eli
Wylie, William
Douek, Daniel C.
author_facet Hu, Jianfei
Boritz, Eli
Wylie, William
Douek, Daniel C.
author_sort Hu, Jianfei
collection PubMed
description The dominance of the major transcript isoform relative to other isoforms from the same gene generated by alternative splicing (AS) is essential to the maintenance of normal cellular physiology. However, the underlying principles that determine such dominance remain unknown. Here, we analyzed the physical AS process and found that it can be modeled by a stochastic minimization process, which causes the scaled expression levels of all transcript isoforms to follow the same Weibull extreme value distribution. Surprisingly, we also found a simple equation to describe the median frequency of transcript isoforms of different dominance. This two-parameter Weibull model provides the statistical distribution of all isoforms of all transcribed genes, and reveals that previously unexplained observations concerning relative isoform expression derive from these principles.
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spelling pubmed-56146562017-10-09 Stochastic principles governing alternative splicing of RNA Hu, Jianfei Boritz, Eli Wylie, William Douek, Daniel C. PLoS Comput Biol Research Article The dominance of the major transcript isoform relative to other isoforms from the same gene generated by alternative splicing (AS) is essential to the maintenance of normal cellular physiology. However, the underlying principles that determine such dominance remain unknown. Here, we analyzed the physical AS process and found that it can be modeled by a stochastic minimization process, which causes the scaled expression levels of all transcript isoforms to follow the same Weibull extreme value distribution. Surprisingly, we also found a simple equation to describe the median frequency of transcript isoforms of different dominance. This two-parameter Weibull model provides the statistical distribution of all isoforms of all transcribed genes, and reveals that previously unexplained observations concerning relative isoform expression derive from these principles. Public Library of Science 2017-09-14 /pmc/articles/PMC5614656/ /pubmed/28910283 http://dx.doi.org/10.1371/journal.pcbi.1005761 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Research Article
Hu, Jianfei
Boritz, Eli
Wylie, William
Douek, Daniel C.
Stochastic principles governing alternative splicing of RNA
title Stochastic principles governing alternative splicing of RNA
title_full Stochastic principles governing alternative splicing of RNA
title_fullStr Stochastic principles governing alternative splicing of RNA
title_full_unstemmed Stochastic principles governing alternative splicing of RNA
title_short Stochastic principles governing alternative splicing of RNA
title_sort stochastic principles governing alternative splicing of rna
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5614656/
https://www.ncbi.nlm.nih.gov/pubmed/28910283
http://dx.doi.org/10.1371/journal.pcbi.1005761
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