Cargando…
Concurrent somatic mutations in driver genes were significantly correlated with lymph node metastasis and pathological types in solid tumors
To demonstrate the mutational profiles in solid tumors, we profiled 165 solid tumor samples, including 9 cancer types and 4 sample types, by using amplicon-based next-generation sequencing panel covering 48 highly mutated tumorigenesis-related genes that were deep sequenced at an average coverage of...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5620293/ https://www.ncbi.nlm.nih.gov/pubmed/28978153 http://dx.doi.org/10.18632/oncotarget.19975 |
_version_ | 1783267557752438784 |
---|---|
author | Cheng, Yanan Wang, Shaojing Han, Lei Liu, Pengpeng Li, Hui Ren, Xiubao Yu, Jinpu Hao, Xishan |
author_facet | Cheng, Yanan Wang, Shaojing Han, Lei Liu, Pengpeng Li, Hui Ren, Xiubao Yu, Jinpu Hao, Xishan |
author_sort | Cheng, Yanan |
collection | PubMed |
description | To demonstrate the mutational profiles in solid tumors, we profiled 165 solid tumor samples, including 9 cancer types and 4 sample types, by using amplicon-based next-generation sequencing panel covering 48 highly mutated tumorigenesis-related genes that were deep sequenced at an average coverage of 2000×. Both tumor and sample types had significant effect on tumor genetic mutational profiles. Concurrent driver mutations were frequently detected in solid tumor, concentrating on both modes of action driver genes (activating or loss of function). Furthermore, in non-small cell lung cancer (NSCLC), concurrent driver mutations were also significantly correlated with the lymph node metastasis status and pathological types. Higher frequency of lymph node metastasis was observed in patients with NSCLC with concurrent mutations on at least two driver genes. In addition, patients with lung adenocarcinoma were more likely to harbor concurrent driver mutations than patients with lung squamous and large cell carcinoma. Multiple mutations in the epidermal growth factor receptor gene were more frequently detected in patients with refractory NSCLC compared to untreated naive ones. Therefore, concurrent multiple driver mutations, rather than a single genetic mutation, should be investigated extensively to probe novel genetic biomarkers with clinical benefits. |
format | Online Article Text |
id | pubmed-5620293 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-56202932017-10-03 Concurrent somatic mutations in driver genes were significantly correlated with lymph node metastasis and pathological types in solid tumors Cheng, Yanan Wang, Shaojing Han, Lei Liu, Pengpeng Li, Hui Ren, Xiubao Yu, Jinpu Hao, Xishan Oncotarget Research Paper To demonstrate the mutational profiles in solid tumors, we profiled 165 solid tumor samples, including 9 cancer types and 4 sample types, by using amplicon-based next-generation sequencing panel covering 48 highly mutated tumorigenesis-related genes that were deep sequenced at an average coverage of 2000×. Both tumor and sample types had significant effect on tumor genetic mutational profiles. Concurrent driver mutations were frequently detected in solid tumor, concentrating on both modes of action driver genes (activating or loss of function). Furthermore, in non-small cell lung cancer (NSCLC), concurrent driver mutations were also significantly correlated with the lymph node metastasis status and pathological types. Higher frequency of lymph node metastasis was observed in patients with NSCLC with concurrent mutations on at least two driver genes. In addition, patients with lung adenocarcinoma were more likely to harbor concurrent driver mutations than patients with lung squamous and large cell carcinoma. Multiple mutations in the epidermal growth factor receptor gene were more frequently detected in patients with refractory NSCLC compared to untreated naive ones. Therefore, concurrent multiple driver mutations, rather than a single genetic mutation, should be investigated extensively to probe novel genetic biomarkers with clinical benefits. Impact Journals LLC 2017-08-07 /pmc/articles/PMC5620293/ /pubmed/28978153 http://dx.doi.org/10.18632/oncotarget.19975 Text en Copyright: © 2017 Cheng et al. http://creativecommons.org/licenses/by/3.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC-BY), which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Research Paper Cheng, Yanan Wang, Shaojing Han, Lei Liu, Pengpeng Li, Hui Ren, Xiubao Yu, Jinpu Hao, Xishan Concurrent somatic mutations in driver genes were significantly correlated with lymph node metastasis and pathological types in solid tumors |
title | Concurrent somatic mutations in driver genes were significantly correlated with lymph node metastasis and pathological types in solid tumors |
title_full | Concurrent somatic mutations in driver genes were significantly correlated with lymph node metastasis and pathological types in solid tumors |
title_fullStr | Concurrent somatic mutations in driver genes were significantly correlated with lymph node metastasis and pathological types in solid tumors |
title_full_unstemmed | Concurrent somatic mutations in driver genes were significantly correlated with lymph node metastasis and pathological types in solid tumors |
title_short | Concurrent somatic mutations in driver genes were significantly correlated with lymph node metastasis and pathological types in solid tumors |
title_sort | concurrent somatic mutations in driver genes were significantly correlated with lymph node metastasis and pathological types in solid tumors |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5620293/ https://www.ncbi.nlm.nih.gov/pubmed/28978153 http://dx.doi.org/10.18632/oncotarget.19975 |
work_keys_str_mv | AT chengyanan concurrentsomaticmutationsindrivergenesweresignificantlycorrelatedwithlymphnodemetastasisandpathologicaltypesinsolidtumors AT wangshaojing concurrentsomaticmutationsindrivergenesweresignificantlycorrelatedwithlymphnodemetastasisandpathologicaltypesinsolidtumors AT hanlei concurrentsomaticmutationsindrivergenesweresignificantlycorrelatedwithlymphnodemetastasisandpathologicaltypesinsolidtumors AT liupengpeng concurrentsomaticmutationsindrivergenesweresignificantlycorrelatedwithlymphnodemetastasisandpathologicaltypesinsolidtumors AT lihui concurrentsomaticmutationsindrivergenesweresignificantlycorrelatedwithlymphnodemetastasisandpathologicaltypesinsolidtumors AT renxiubao concurrentsomaticmutationsindrivergenesweresignificantlycorrelatedwithlymphnodemetastasisandpathologicaltypesinsolidtumors AT yujinpu concurrentsomaticmutationsindrivergenesweresignificantlycorrelatedwithlymphnodemetastasisandpathologicaltypesinsolidtumors AT haoxishan concurrentsomaticmutationsindrivergenesweresignificantlycorrelatedwithlymphnodemetastasisandpathologicaltypesinsolidtumors |