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A parallel approximate string matching under Levenshtein distance on graphics processing units using warp-shuffle operations

Approximate string matching with k-differences has a number of practical applications, ranging from pattern recognition to computational biology. This paper proposes an efficient memory-access algorithm for parallel approximate string matching with k-differences on Graphics Processing Units (GPUs)....

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Detalles Bibliográficos
Autores principales: Ho, ThienLuan, Oh, Seung-Rohk, Kim, HyunJin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634649/
https://www.ncbi.nlm.nih.gov/pubmed/29016700
http://dx.doi.org/10.1371/journal.pone.0186251