Cargando…

Revealing complete complex KIR haplotypes phased by long-read sequencing technology

The killer cell immunoglobulin-like receptor (KIR) region of human chromosome 19 contains up to 16 genes for natural killer (NK) cell receptors that recognize human leukocyte antigen (HLA)/peptide complexes and other ligands. The KIR proteins fulfill functional roles in infections, pregnancy, autoim...

Descripción completa

Detalles Bibliográficos
Autores principales:	Roe, D, Vierra-Green, C, Pyo, C-W, Eng, K, Hall, R, Kuang, R, Spellman, S, Ranade, S, Geraghty, D E, Maiers, M
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group 2017
Materias:	Original Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5637231/ https://www.ncbi.nlm.nih.gov/pubmed/28569259 http://dx.doi.org/10.1038/gene.2017.10

Ejemplares similares

A Detailed View of KIR Haplotype Structures and Gene Families as Provided by a New Motif-Based Multiple Sequence Alignment
por: Roe, David, et al.
Publicado: (2020)

Corrigendum: A Detailed View of KIR Haplotype Structures and Gene Families as Provided by a New Motif-Based Multiple Sequence Alignment
por: Roe, David, et al.
Publicado: (2021)

Estimating KIR Haplotype Frequencies on a Cohort of 10,000 Individuals: A Comprehensive Study on Population Variations, Typing Resolutions, and Reference Haplotypes
por: Vierra-Green, Cynthia, et al.
Publicado: (2016)

Efficient Sequencing, Assembly, and Annotation of Human KIR Haplotypes
por: Roe, David, et al.
Publicado: (2020)

Allele-Level Haplotype Frequencies and Pairwise Linkage Disequilibrium for 14 KIR Loci in 506 European-American Individuals
por: Vierra-Green, Cynthia, et al.
Publicado: (2012)

Accurate and Efficient KIR Gene and Haplotype Inference From Genome Sequencing Reads With Novel K-mer Signatures
por: Roe, David, et al.
Publicado: (2020)

Complete haplotype phasing of the MHC and KIR loci with targeted HaploSeq
por: Selvaraj, Siddarth, et al.
Publicado: (2015)

Short KIR Haplotypes in Pygmy Chimpanzee (Bonobo) Resemble the Conserved Framework of Diverse Human KIR Haplotypes
por: Rajalingam, Raja, et al.
Publicado: (2001)

The mosaic of KIR haplotypes in rhesus macaques
por: Blokhuis, Jeroen H., et al.
Publicado: (2010)

Estimation of German KIR Allele Group Haplotype Frequencies
por: Solloch, Ute V., et al.
Publicado: (2020)

KIR and HLA haplotype analysis in a family lacking the KIR 2DL1-2DP1 genes
por: Vojvodić, S, et al.
Publicado: (2015)

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing
por: Stapleton, James A., et al.
Publicado: (2016)

Editorial: HLA and KIR Diversity and Polymorphisms: Emerging Concepts
por: Maiers, Martin, et al.
Publicado: (2021)

Genotype List String: a grammar for describing HLA and KIR genotyping results in a text string
por: Milius, R P, et al.
Publicado: (2013)

Variant phasing and haplotypic expression from long-read sequencing in maize
por: Wang, Bo, et al.
Publicado: (2020)

HLA class I haplotype diversity is consistent with selection for frequent existing haplotypes
por: Alter, Idan, et al.
Publicado: (2017)

qKAT: a high-throughput qPCR method for KIR gene copy number and haplotype determination
por: Jiang, W., et al.
Publicado: (2016)

KIR haplotypes are associated with late-onset type 1 diabetes in European–American families
por: Traherne, J A, et al.
Publicado: (2016)

High-Resolution Analysis Identifies High Frequency of KIR-A Haplotypes and Inhibitory Interactions of KIR With HLA Class I in Zhejiang Han
por: Tao, Sudan, et al.
Publicado: (2021)

Haplotype threading: accurate polyploid phasing from long reads
por: Schrinner, Sven D., et al.
Publicado: (2020)

Recombinant structures expand and contract inter and intragenic diversification at the KIR locus
por: Pyo, Chul-Woo, et al.
Publicado: (2013)

Pitfalls of haplotype phasing from amplicon-based long-read sequencing
por: Laver, Thomas W., et al.
Publicado: (2016)

KIR Variation in Iranians Combines High Haplotype and Allotype Diversity With an Abundance of Functional Inhibitory Receptors
por: Alicata, Claudia, et al.
Publicado: (2020)

Low CD4+ T Cell Counts among African HIV-1 Infected Subjects with Group B KIR Haplotypes in the Absence of Specific Inhibitory KIR Ligands
por: Jennes, Wim, et al.
Publicado: (2011)

Haplotype-Based Analysis of KIR-Gene Profiles in a South European Population—Distribution of Standard and Variant Haplotypes, and Identification of Novel Recombinant Structures
por: Cisneros, Elisa, et al.
Publicado: (2020)

Haplotype Motif-Based Models for KIR-Genotype Informed Selection of Hematopoietic Cell Donors Fail to Predict Outcome of Patients With Myelodysplastic Syndromes or Secondary Acute Myeloid Leukemia
por: Schetelig, Johannes, et al.
Publicado: (2021)

KIR genotype distribution among patients with multiple myeloma: Higher prevalence of KIR 2DS4 and KIR 2DS5 genes
por: Hoteit, R., et al.
Publicado: (2014)

Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C
por: Kronenberg, Zev N., et al.
Publicado: (2021)

Corrigendum: Haplotype Motif-Based Models for KIR-Genotype Informed Selection of Hematopoietic Cell Donors Fail to Predict Outcome of Patients With Myelodysplastic Syndromes or Secondary Acute Myeloid Leukemia
por: Schetelig, Johannes, et al.
Publicado: (2021)

Killer Cell Immunoglobulin-Like Receptors (KIRs) Genotype and Haplotype Analysis in Iranians with Non-Melanoma Skin Cancers
por: Yousefinejad, Fahimeh, et al.
Publicado: (2019)

Race, Ethnicity and Ancestry in Unrelated Transplant Matching for the National Marrow Donor Program: A Comparison of Multiple Forms of Self-Identification with Genetics
por: Hollenbach, Jill A., et al.
Publicado: (2015)

A Long-Read Sequencing Approach for Direct Haplotype Phasing in Clinical Settings
por: Maestri, Simone, et al.
Publicado: (2020)

Haplotype-aware diplotyping from noisy long reads
por: Ebler, Jana, et al.
Publicado: (2019)

A combined DPA1∼DPB1 amino acid epitope is the primary unit of selection on the HLA-DP heterodimer
por: Hollenbach, Jill A., et al.
Publicado: (2012)

Discovery, Characterization, and Structure–Activity Relationships of an Inhibitor of Inward Rectifier Potassium (Kir) Channels with Preference for Kir2.3, Kir3.X, and Kir7.1
por: Raphemot, Rene, et al.
Publicado: (2011)

Detecting haplotype-specific transcript variation in long reads with FLAIR2
por: Tang, Alison D., et al.
Publicado: (2023)

REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats
por: Dolzhenko, Egor, et al.
Publicado: (2022)

Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes
por: Bansal, Vikas
Publicado: (2019)

flopp: Extremely Fast Long-Read Polyploid Haplotype Phasing by Uniform Tree Partitioning
por: Shaw, Jim, et al.
Publicado: (2022)

HI: haplotype improver using paired-end short reads
por: Long, Quan, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_1hatv6f5rrat09bcke7pv6djea