Cargando…

Comparative genomic analyses highlight the contribution of pseudogenized protein-coding genes to human lincRNAs

BACKGROUND: The regulatory roles of long intergenic noncoding RNAs (lincRNAs) in humans have been revealed through the use of advanced sequencing technology. Recently, three possible scenarios of lincRNA origins have been proposed: de novo origination from intergenic regions, duplication from other...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Wan-Hsin, Tsai, Zing Tsung-Yeh, Tsai, Huai-Kuang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5644071/ https://www.ncbi.nlm.nih.gov/pubmed/29037146 http://dx.doi.org/10.1186/s12864-017-4156-x

Ejemplares similares

Splicing of enhancer-associated lincRNAs contributes to enhancer activity
por: Tan, Jennifer Y, et al.
Publicado: (2020)

Identification of transcribed protein coding sequence remnants within lincRNAs
por: Talyan, Sweta, et al.
Publicado: (2018)

Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast
por: Tsai, Zing Tsung-Yeh, et al.
Publicado: (2015)

Long Intergenic Non-Coding RNAs (LincRNAs) Identified by RNA-Seq in Breast Cancer
por: Ding, Xianfeng, et al.
Publicado: (2014)

Dysregulated Expression of Long Intergenic Non-coding RNAs (LincRNAs) in Urothelial Bladder Carcinoma
por: Ousati Ashtiani, Zahra, et al.
Publicado: (2017)

Chromatin Landscape Distinguishes the Genomic Loci of Hundreds of Androgen-Receptor-Associated LincRNAs From the Loci of Non-associated LincRNAs
por: daSilva, Lucas F., et al.
Publicado: (2018)

Non-coding yet non-trivial: a review on the computational genomics of lincRNAs
por: Ching, Travers, et al.
Publicado: (2015)

LincRNA landscape in human lymphocytes highlights regulation of T cell differentiation by linc-MAF-4
por: Ranzani, Valeria, et al.
Publicado: (2015)

lincRNAs act in the circuitry controlling pluripotency and differentiation
por: Guttman, Mitchell, et al.
Publicado: (2011)

HOXs and lincRNAs: Two sides of the same coin
por: De Kumar, Bony, et al.
Publicado: (2016)

The conservation and signatures of lincRNAs in Marek’s disease of chicken
por: He, Yanghua, et al.
Publicado: (2015)

The evolutionary landscape and expression pattern of plant lincRNAs
por: Chen, Li, et al.
Publicado: (2022)

Placental circadian lincRNAs and spontaneous preterm birth
por: Zhou, Guoli, et al.
Publicado: (2023)

Identification of long intergenic non-coding RNAs (lincRNAs) deregulated in gastrointestinal stromal tumors (GISTs)
por: Gyvyte, Ugne, et al.
Publicado: (2018)

DiseaseLinc: Disease Enrichment Analysis of Sets of Differentially Expressed LincRNAs
por: More, Piyush, et al.
Publicado: (2021)

The Contribution of lincRNAs at the Interface between Cell Cycle Regulation and Cell State Maintenance
por: Biasini, Adriano, et al.
Publicado: (2020)

MiRNAs and LincRNAs: Could They Be Considered as Biomarkers in Colorectal Cancer?
por: Zarate, Ruth, et al.
Publicado: (2012)

Corrigendum: The conservation and signatures of lincRNAs in Marek’s disease of chicken
por: He, Yanghua, et al.
Publicado: (2016)

Expression and regulation of lincRNAs during T cell development and differentiation
por: Hu, Gangqing, et al.
Publicado: (2013)

Distinctive Patterns of Transcription and RNA Processing for Human lincRNAs
por: Schlackow, Margarita, et al.
Publicado: (2017)

Chromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAs
por: Melé, Marta, et al.
Publicado: (2017)

LincRNAs and snoRNAs in Breast Cancer Cell Metastasis: The Unknown Players
por: Louca, Maria, et al.
Publicado: (2022)

Comparative analysis of lincRNA in insect species
por: Lopez-Ezquerra, Alberto, et al.
Publicado: (2017)

Functional Urate-Associated Genetic Variants Influence Expression of lincRNAs LINC01229 and MAFTRR
por: Leask, Megan, et al.
Publicado: (2019)

Computational identification of putative lincRNAs in mouse embryonic stem cell
por: Liu, Hui, et al.
Publicado: (2016)

Systematic evaluation of C. elegans lincRNAs with CRISPR knockout mutants
por: Wei, Shuai, et al.
Publicado: (2019)

Global and cell-type specific properties of lincRNAs with ribosome occupancy
por: Wang, Hongwei, et al.
Publicado: (2017)

Sperm Originated Chromatin Imprints and LincRNAs in Organismal Development and Cancer
por: Subhash, Santhilal, et al.
Publicado: (2020)

Corrigendum: Functional Urate-Associated Genetic Variants Influence Expression of lincRNAs LINC01229 and MAFTRR
por: Leask, Megan, et al.
Publicado: (2019)

Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes
por: Rombaut, Dries, et al.
Publicado: (2019)

Comprehensive Analysis of LincRNAs in Classical and Basal-Like Subtypes of Pancreatic Cancer
por: Glaß, Markus, et al.
Publicado: (2020)

Associations between intronic non-B DNA structures and exon skipping
por: Tsai, Zing Tsung-Yeh, et al.
Publicado: (2014)

Borders of Cis-Regulatory DNA Sequences Preferentially Harbor the Divergent Transcription Factor Binding Motifs in the Human Genome
por: Huang, Jia-Hsin, et al.
Publicado: (2018)

Genome-wide analysis of enhancer RNA in gene regulation across 12 mouse tissues
por: Cheng, Jen-Hao, et al.
Publicado: (2015)

The MS-lincRNA landscape reveals a novel lincRNA BCLIN25 that contributes to tumorigenesis by upregulating ERBB2 expression via epigenetic modification and RNA–RNA interactions in breast cancer
por: Xu, Shouping, et al.
Publicado: (2019)

LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia
por: Emmrich, Stephan, et al.
Publicado: (2014)

Multiple knockout mouse models reveal lincRNAs are required for life and brain development
por: Sauvageau, Martin, et al.
Publicado: (2013)

Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs
por: Lai, Ka-Man Venus, et al.
Publicado: (2015)

A Novel Approach to Identify Enhancer lincRNAs by Integrating Genome, Epigenome, and Regulatome
por: Liu, Hui, et al.
Publicado: (2019)

Uncovering association networks through an eQTL analysis involving human miRNAs and lincRNAs
por: Branco, Paulo R., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_ba8i9qk2m3ed1j0rpsk30vhcpq