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Spatial constraints govern competition of mutant clones in human epidermis
Deep sequencing can detect somatic DNA mutations in tissues permitting inference of clonal relationships. This has been applied to human epidermis, where sun exposure leads to the accumulation of mutations and an increased risk of skin cancer. However, previous studies have yielded conflicting concl...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5654977/ https://www.ncbi.nlm.nih.gov/pubmed/29066762 http://dx.doi.org/10.1038/s41467-017-00993-8 |
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author | Lynch, M. D. Lynch, C. N. S. Craythorne, E. Liakath-Ali, K. Mallipeddi, R. Barker, J. N. Watt, F. M. |
author_facet | Lynch, M. D. Lynch, C. N. S. Craythorne, E. Liakath-Ali, K. Mallipeddi, R. Barker, J. N. Watt, F. M. |
author_sort | Lynch, M. D. |
collection | PubMed |
description | Deep sequencing can detect somatic DNA mutations in tissues permitting inference of clonal relationships. This has been applied to human epidermis, where sun exposure leads to the accumulation of mutations and an increased risk of skin cancer. However, previous studies have yielded conflicting conclusions about the relative importance of positive selection and neutral drift in clonal evolution. Here, we sequenced larger areas of skin than previously, focusing on cancer-prone skin spanning five decades of life. The mutant clones identified were too large to be accounted for solely by neutral drift. Rather, using mathematical modelling and computational lattice-based simulations, we show that observed clone size distributions can be explained by a combination of neutral drift and stochastic nucleation of mutations at the boundary of expanding mutant clones that have a competitive advantage. These findings demonstrate that spatial context and cell competition cooperate to determine the fate of a mutant stem cell. |
format | Online Article Text |
id | pubmed-5654977 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-56549772017-10-26 Spatial constraints govern competition of mutant clones in human epidermis Lynch, M. D. Lynch, C. N. S. Craythorne, E. Liakath-Ali, K. Mallipeddi, R. Barker, J. N. Watt, F. M. Nat Commun Article Deep sequencing can detect somatic DNA mutations in tissues permitting inference of clonal relationships. This has been applied to human epidermis, where sun exposure leads to the accumulation of mutations and an increased risk of skin cancer. However, previous studies have yielded conflicting conclusions about the relative importance of positive selection and neutral drift in clonal evolution. Here, we sequenced larger areas of skin than previously, focusing on cancer-prone skin spanning five decades of life. The mutant clones identified were too large to be accounted for solely by neutral drift. Rather, using mathematical modelling and computational lattice-based simulations, we show that observed clone size distributions can be explained by a combination of neutral drift and stochastic nucleation of mutations at the boundary of expanding mutant clones that have a competitive advantage. These findings demonstrate that spatial context and cell competition cooperate to determine the fate of a mutant stem cell. Nature Publishing Group UK 2017-10-24 /pmc/articles/PMC5654977/ /pubmed/29066762 http://dx.doi.org/10.1038/s41467-017-00993-8 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Lynch, M. D. Lynch, C. N. S. Craythorne, E. Liakath-Ali, K. Mallipeddi, R. Barker, J. N. Watt, F. M. Spatial constraints govern competition of mutant clones in human epidermis |
title | Spatial constraints govern competition of mutant clones in human epidermis |
title_full | Spatial constraints govern competition of mutant clones in human epidermis |
title_fullStr | Spatial constraints govern competition of mutant clones in human epidermis |
title_full_unstemmed | Spatial constraints govern competition of mutant clones in human epidermis |
title_short | Spatial constraints govern competition of mutant clones in human epidermis |
title_sort | spatial constraints govern competition of mutant clones in human epidermis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5654977/ https://www.ncbi.nlm.nih.gov/pubmed/29066762 http://dx.doi.org/10.1038/s41467-017-00993-8 |
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