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Refactoring the Genetic Code for Increased Evolvability

The standard genetic code is robust to mutations during transcription and translation. Point mutations are likely to be synonymous or to preserve the chemical properties of the original amino acid. Saturation mutagenesis experiments suggest that in some cases the best-performing mutant requires repl...

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Detalles Bibliográficos
Autores principales: Pines, Gur, Winkler, James D., Pines, Assaf, Gill, Ryan T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686537/
https://www.ncbi.nlm.nih.gov/pubmed/29138304
http://dx.doi.org/10.1128/mBio.01654-17
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author Pines, Gur
Winkler, James D.
Pines, Assaf
Gill, Ryan T.
author_facet Pines, Gur
Winkler, James D.
Pines, Assaf
Gill, Ryan T.
author_sort Pines, Gur
collection PubMed
description The standard genetic code is robust to mutations during transcription and translation. Point mutations are likely to be synonymous or to preserve the chemical properties of the original amino acid. Saturation mutagenesis experiments suggest that in some cases the best-performing mutant requires replacement of more than a single nucleotide within a codon. These replacements are essentially inaccessible to common error-based laboratory engineering techniques that alter a single nucleotide per mutation event, due to the extreme rarity of adjacent mutations. In this theoretical study, we suggest a radical reordering of the genetic code that maximizes the mutagenic potential of single nucleotide replacements. We explore several possible genetic codes that allow a greater degree of accessibility to the mutational landscape and may result in a hyperevolvable organism that could serve as an ideal platform for directed evolution experiments. We then conclude by evaluating the challenges of constructing such recoded organisms and their potential applications within the field of synthetic biology.
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spelling pubmed-56865372017-11-17 Refactoring the Genetic Code for Increased Evolvability Pines, Gur Winkler, James D. Pines, Assaf Gill, Ryan T. mBio Research Article The standard genetic code is robust to mutations during transcription and translation. Point mutations are likely to be synonymous or to preserve the chemical properties of the original amino acid. Saturation mutagenesis experiments suggest that in some cases the best-performing mutant requires replacement of more than a single nucleotide within a codon. These replacements are essentially inaccessible to common error-based laboratory engineering techniques that alter a single nucleotide per mutation event, due to the extreme rarity of adjacent mutations. In this theoretical study, we suggest a radical reordering of the genetic code that maximizes the mutagenic potential of single nucleotide replacements. We explore several possible genetic codes that allow a greater degree of accessibility to the mutational landscape and may result in a hyperevolvable organism that could serve as an ideal platform for directed evolution experiments. We then conclude by evaluating the challenges of constructing such recoded organisms and their potential applications within the field of synthetic biology. American Society for Microbiology 2017-11-14 /pmc/articles/PMC5686537/ /pubmed/29138304 http://dx.doi.org/10.1128/mBio.01654-17 Text en Copyright © 2017 Pines et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research Article
Pines, Gur
Winkler, James D.
Pines, Assaf
Gill, Ryan T.
Refactoring the Genetic Code for Increased Evolvability
title Refactoring the Genetic Code for Increased Evolvability
title_full Refactoring the Genetic Code for Increased Evolvability
title_fullStr Refactoring the Genetic Code for Increased Evolvability
title_full_unstemmed Refactoring the Genetic Code for Increased Evolvability
title_short Refactoring the Genetic Code for Increased Evolvability
title_sort refactoring the genetic code for increased evolvability
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686537/
https://www.ncbi.nlm.nih.gov/pubmed/29138304
http://dx.doi.org/10.1128/mBio.01654-17
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