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Refactoring the Genetic Code for Increased Evolvability
The standard genetic code is robust to mutations during transcription and translation. Point mutations are likely to be synonymous or to preserve the chemical properties of the original amino acid. Saturation mutagenesis experiments suggest that in some cases the best-performing mutant requires repl...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society for Microbiology
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686537/ https://www.ncbi.nlm.nih.gov/pubmed/29138304 http://dx.doi.org/10.1128/mBio.01654-17 |
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author | Pines, Gur Winkler, James D. Pines, Assaf Gill, Ryan T. |
author_facet | Pines, Gur Winkler, James D. Pines, Assaf Gill, Ryan T. |
author_sort | Pines, Gur |
collection | PubMed |
description | The standard genetic code is robust to mutations during transcription and translation. Point mutations are likely to be synonymous or to preserve the chemical properties of the original amino acid. Saturation mutagenesis experiments suggest that in some cases the best-performing mutant requires replacement of more than a single nucleotide within a codon. These replacements are essentially inaccessible to common error-based laboratory engineering techniques that alter a single nucleotide per mutation event, due to the extreme rarity of adjacent mutations. In this theoretical study, we suggest a radical reordering of the genetic code that maximizes the mutagenic potential of single nucleotide replacements. We explore several possible genetic codes that allow a greater degree of accessibility to the mutational landscape and may result in a hyperevolvable organism that could serve as an ideal platform for directed evolution experiments. We then conclude by evaluating the challenges of constructing such recoded organisms and their potential applications within the field of synthetic biology. |
format | Online Article Text |
id | pubmed-5686537 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | American Society for Microbiology |
record_format | MEDLINE/PubMed |
spelling | pubmed-56865372017-11-17 Refactoring the Genetic Code for Increased Evolvability Pines, Gur Winkler, James D. Pines, Assaf Gill, Ryan T. mBio Research Article The standard genetic code is robust to mutations during transcription and translation. Point mutations are likely to be synonymous or to preserve the chemical properties of the original amino acid. Saturation mutagenesis experiments suggest that in some cases the best-performing mutant requires replacement of more than a single nucleotide within a codon. These replacements are essentially inaccessible to common error-based laboratory engineering techniques that alter a single nucleotide per mutation event, due to the extreme rarity of adjacent mutations. In this theoretical study, we suggest a radical reordering of the genetic code that maximizes the mutagenic potential of single nucleotide replacements. We explore several possible genetic codes that allow a greater degree of accessibility to the mutational landscape and may result in a hyperevolvable organism that could serve as an ideal platform for directed evolution experiments. We then conclude by evaluating the challenges of constructing such recoded organisms and their potential applications within the field of synthetic biology. American Society for Microbiology 2017-11-14 /pmc/articles/PMC5686537/ /pubmed/29138304 http://dx.doi.org/10.1128/mBio.01654-17 Text en Copyright © 2017 Pines et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Article Pines, Gur Winkler, James D. Pines, Assaf Gill, Ryan T. Refactoring the Genetic Code for Increased Evolvability |
title | Refactoring the Genetic Code for Increased Evolvability |
title_full | Refactoring the Genetic Code for Increased Evolvability |
title_fullStr | Refactoring the Genetic Code for Increased Evolvability |
title_full_unstemmed | Refactoring the Genetic Code for Increased Evolvability |
title_short | Refactoring the Genetic Code for Increased Evolvability |
title_sort | refactoring the genetic code for increased evolvability |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686537/ https://www.ncbi.nlm.nih.gov/pubmed/29138304 http://dx.doi.org/10.1128/mBio.01654-17 |
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