On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data

To benchmark algorithms for automated plasmid sequence reconstruction from short-read sequencing data, we selected 42 publicly available complete bacterial genome sequences spanning 12 genera, containing 148 plasmids. We predicted plasmids from short-read data with four programs (PlasmidSPAdes, Recy...

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Detalles Bibliográficos
Autores principales: Arredondo-Alonso, Sergio, Willems, Rob J., van Schaik, Willem, Schürch, Anita C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2017
Materias:
Methods Paper
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5695206/
https://www.ncbi.nlm.nih.gov/pubmed/29177087
http://dx.doi.org/10.1099/mgen.0.000128

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5695206/
https://www.ncbi.nlm.nih.gov/pubmed/29177087
http://dx.doi.org/10.1099/mgen.0.000128

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