Cargando…

Molecular mechanism of DNA association with single-stranded DNA binding protein

During DNA replication, the single-stranded DNA binding protein (SSB) wraps single-stranded DNA (ssDNA) with high affinity to protect it from degradation and prevent secondary structure formation. Although SSB binds ssDNA tightly, it can be repositioned along ssDNA to follow the advancement of the r...

Descripción completa

Detalles Bibliográficos
Autores principales:	Maffeo, Christopher, Aksimentiev, Aleksei
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2017
Materias:	Computational Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5716091/ https://www.ncbi.nlm.nih.gov/pubmed/29059392 http://dx.doi.org/10.1093/nar/gkx917

Ejemplares similares

De novo reconstruction of DNA origami structures through atomistic molecular dynamics simulation
por: Maffeo, Christopher, et al.
Publicado: (2016)

End-to-end attraction of duplex DNA
por: Maffeo, Christopher, et al.
Publicado: (2012)

DNA sequence and methylation prescribe the inside-out conformational dynamics and bending energetics of DNA minicircles
por: Yoo, Jejoong, et al.
Publicado: (2021)

MrDNA: a multi-resolution model for predicting the structure and dynamics of DNA systems
por: Maffeo, Christopher, et al.
Publicado: (2020)

A Coarse-Grained Model of Unstructured Single-Stranded DNA Derived from Atomistic Simulation and Single-Molecule Experiment
por: Maffeo, Christopher, et al.
Publicado: (2014)

The structure and intermolecular forces of DNA condensates
por: Yoo, Jejoong, et al.
Publicado: (2016)

Mechanism of RecO recruitment to DNA by single-stranded DNA binding protein
por: Ryzhikov, Mikhail, et al.
Publicado: (2011)

Conformational Transitions and Stop-and-Go Nanopore Transport of Single Stranded DNA on Charged Graphene
por: Shankla, Manish, et al.
Publicado: (2014)

The process of displacing the single-stranded DNA-binding protein from single-stranded DNA by RecO and RecR proteins
por: Inoue, Jin, et al.
Publicado: (2008)

Chiral Systems Made from DNA
por: Winogradoff, David, et al.
Publicado: (2021)

Systematic search for structural motifs of peptide binding to double-stranded DNA
por: Kolchina, Nina, et al.
Publicado: (2019)

Entrapment of DNA in an intersubunit tunnel system of a single-stranded DNA-binding protein
por: Ghalei, Homa, et al.
Publicado: (2014)

Rolling circle replication requires single-stranded DNA binding protein to avoid termination and production of double-stranded DNA
por: Ducani, Cosimo, et al.
Publicado: (2014)

Single-molecule biophysics experiments in silico: Toward a physical model of a replisome
por: Maffeo, Christopher, et al.
Publicado: (2022)

Leakless end-to-end transport of small molecules through micron-length DNA nanochannels
por: Li, Yi, et al.
Publicado: (2022)

Electron attachment-induced DNA single-strand breaks at the pyrimidine sites
por: Gu, Jiande, et al.
Publicado: (2010)

Mechanism of Interaction between Single-Stranded DNA Binding Protein and DNA
por: Kunzelmann, Simone, et al.
Publicado: (2009)

Development of a single-stranded DNA-binding protein fluorescent fusion toolbox
por: Dubiel, Katarzyna, et al.
Publicado: (2020)

Structural transitions during the cooperative assembly of baculovirus single-stranded DNA-binding protein on ssDNA
por: Yin, Jiayi, et al.
Publicado: (2022)

Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA
por: Carson, Spencer, et al.
Publicado: (2016)

Structural predictions of protein–DNA binding: MELD-DNA
por: Esmaeeli, Reza, et al.
Publicado: (2023)

Direct evidence for sequence-dependent attraction between double-stranded DNA controlled by methylation
por: Yoo, Jejoong, et al.
Publicado: (2016)

Computational analysis of DNA replicases in double-stranded DNA viruses: relationship with the genome size
por: Kazlauskas, Darius, et al.
Publicado: (2011)

Molecular Dynamics Simulation of DNA Capture and Transport in Heated Nanopores
por: Belkin, Maxim, et al.
Publicado: (2016)

Co-condensation of proteins with single- and double-stranded DNA
por: Renger, Roman, et al.
Publicado: (2022)

Percolation transition prescribes protein size-specific barrier to passive transport through the nuclear pore complex
por: Winogradoff, David, et al.
Publicado: (2022)

Strand bias influences the mechanism of gene editing directed by single-stranded DNA oligonucleotides
por: Falgowski, Kerry, et al.
Publicado: (2011)

Optical Voltage Sensing Using DNA Origami
por: Hemmig, Elisa A., et al.
Publicado: (2018)

Structural dynamics of E. coli single-stranded DNA binding protein reveal DNA wrapping and unwrapping pathways
por: Suksombat, Sukrit, et al.
Publicado: (2015)

Switch-like control of helicase processivity by single-stranded DNA binding protein
por: Stekas, Barbara, et al.
Publicado: (2021)

Structural changes in DNA-binding proteins on complexation
por: Poddar, Sayan, et al.
Publicado: (2018)

The logic of DNA replication in double-stranded DNA viruses: insights from global analysis of viral genomes
por: Kazlauskas, Darius, et al.
Publicado: (2016)

Mechanism of Exonuclease I stimulation by the single-stranded DNA-binding protein
por: Lu, Duo, et al.
Publicado: (2011)

The structure of DdrB from Deinococcus: a new fold for single-stranded DNA binding proteins
por: Sugiman-Marangos, Seiji, et al.
Publicado: (2010)

Towards computional specificity screening of DNA-binding proteins
por: Seeliger, Daniel, et al.
Publicado: (2011)

Discovering protein–DNA binding sequence patterns using association rule mining
por: Leung, Kwong-Sak, et al.
Publicado: (2010)

3D structure of Thermus aquaticus single-stranded DNA–binding protein gives insight into the functioning of SSB proteins
por: Fedorov, Roman, et al.
Publicado: (2006)

DNA asymmetry promotes SUMO modification of the single‐stranded DNA‐binding protein RPA
por: Cappadocia, Laurent, et al.
Publicado: (2021)

Fluorescent single-stranded DNA-binding protein from Plasmodium falciparum as a biosensor for single-stranded DNA
por: Chisty, Liisa T., et al.
Publicado: (2018)

Double-strand DNA end-binding and sliding of the toroidal CRISPR-associated protein Csn2
por: Arslan, Zihni, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_uq5utimbms8jvrjghle1hitqh0