Cargando…
Inference of genetic relatedness between viral quasispecies from sequencing data
BACKGROUND: RNA viruses such as HCV and HIV mutate at extremely high rates, and as a result, they exist in infected hosts as populations of genetically related variants. Recent advances in sequencing technologies make possible to identify such populations at great depth. In particular, these technol...
Autores principales: | Glebova, Olga, Knyazev, Sergey, Melnyk, Andrew, Artyomenko, Alexander, Khudyakov, Yury, Zelikovsky, Alex, Skums, Pavel |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5731608/ https://www.ncbi.nlm.nih.gov/pubmed/29244009 http://dx.doi.org/10.1186/s12864-017-4274-5 |
Ejemplares similares
-
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows
por: Skums, Pavel, et al.
Publicado: (2013) -
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants
por: Tsyvina, Viachaslau, et al.
Publicado: (2018) -
Using earth mover’s distance for viral outbreak investigations
por: Melnyk, Andrew, et al.
Publicado: (2020) -
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction
por: Knyazev, Sergey, et al.
Publicado: (2021) -
Inferring viral quasispecies spectra from 454 pyrosequencing reads
por: Astrovskaya, Irina, et al.
Publicado: (2011)