Cargando…

Accuracy of Programs for the Determination of Human Leukocyte Antigen Alleles from Next-Generation Sequencing Data

The human leukocyte antigen (HLA) genes code for proteins that play a central role in the function of the immune system by presenting peptide antigens to T cells. As HLA genes show extremely high genetic polymorphism, HLA typing at the allele level is demanding and is based on DNA sequencing. Determ...

Descripción completa

Detalles Bibliográficos
Autores principales:	Larjo, Antti, Eveleigh, Robert, Kilpeläinen, Elina, Kwan, Tony, Pastinen, Tomi, Koskela, Satu, Partanen, Jukka
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2017
Materias:	Immunology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5733459/ https://www.ncbi.nlm.nih.gov/pubmed/29326702 http://dx.doi.org/10.3389/fimmu.2017.01815

Ejemplares similares

Hidden genomic MHC disparity between HLA-matched sibling pairs in hematopoietic stem cell transplantation
por: Koskela, Satu, et al.
Publicado: (2018)

Computational Analysis of HLA-presentation of Non-synonymous Recipient Mismatches Indicates Effect on the Risk of Chronic Graft-vs.-Host Disease After Allogeneic HSCT
por: Ritari, Jarmo, et al.
Publicado: (2019)

HLA RNA Sequencing With Unique Molecular Identifiers Reveals High Allele-Specific Variability in mRNA Expression
por: Johansson, Tiira, et al.
Publicado: (2021)

Increasing accuracy of HLA imputation by a population-specific reference panel in a FinnGen biobank cohort
por: Ritari, Jarmo, et al.
Publicado: (2020)

FinDonor 10 000 study: a cohort to identify iron depletion and factors affecting it in Finnish blood donors
por: Lobier, Muriel, et al.
Publicado: (2019)

KIR gene content imputation from single-nucleotide polymorphisms in the Finnish population
por: Ritari, Jarmo, et al.
Publicado: (2022)

Graft Immune Cell Composition Associates with Clinical Outcome of Allogeneic Hematopoietic Stem Cell Transplantation in Patients with AML
por: Impola, Ulla, et al.
Publicado: (2016)

Sequence-Based Genotyping of Expressed Swine Leukocyte Antigen Class I Alleles by Next-Generation Sequencing Reveal Novel Swine Leukocyte Antigen Class I Haplotypes and Alleles in Belgian, Danish, and Kenyan Fattening Pigs and Göttingen Minipigs
por: Sørensen, Maria Rathmann, et al.
Publicado: (2017)

Targeted RNA-Based Oxford Nanopore Sequencing for Typing 12 Classical HLA Genes
por: Johansson, Tiira, et al.
Publicado: (2021)

Blood donor biobank and HLA imputation as a resource for HLA homozygous cells for therapeutic and research use
por: Clancy, Jonna, et al.
Publicado: (2022)

Exploring rare and low-frequency variants in the Saguenay–Lac-Saint-Jean population identified genes associated with asthma and allergy traits
por: Morin, Andréanne, et al.
Publicado: (2018)

Donor Haplotype B of NK KIR Receptor Reduces the Relapse Risk in HLA-Identical Sibling Hematopoietic Stem Cell Transplantation of AML Patients
por: Impola, Ulla, et al.
Publicado: (2014)

Genetic polymorphism related to monocyte-macrophage function is associated with graft-versus-host disease
por: Hyvärinen, Kati, et al.
Publicado: (2017)

Human Leukocyte Antigen Class I and II Alleles and Cervical Adenocarcinoma
por: Safaeian, Mahboobeh, et al.
Publicado: (2014)

Human Leukocyte Antigen Alleles and Cytomegalovirus Infection After Renal Transplantation
por: Futohi, Farzaneh, et al.
Publicado: (2015)

Allele and haplotype frequencies of human platelet and leukocyte antigens in platelet donors
por: Dutra, Valeria de Freitas, et al.
Publicado: (2019)

HLA allele-specific expression: Methods, disease associations, and relevance in hematopoietic stem cell transplantation
por: Johansson, Tiira, et al.
Publicado: (2022)

Personalized and graph genomes reveal missing signal in epigenomic data
por: Groza, Cristian, et al.
Publicado: (2020)

Comments on: “Frequency of alleles and haplotypes of the human leukocyte antigen in Bauru, São Paulo”
por: de Souza, Vânia Nieto Brito
Publicado: (2014)

Human leukocyte antigen-E alleles and expression in patients with serous ovarian cancer
por: Zheng, Hui, et al.
Publicado: (2015)

Allele-Independent Turnover of Human Leukocyte Antigen (HLA) Class Ia Molecules
por: Prevosto, Claudia, et al.
Publicado: (2016)

Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery
por: Lee, Heewook, et al.
Publicado: (2018)

Human Leukocyte Antigen Alleles Compatibility and Immunophenotypic Profile Associations in Infertile Couples
por: Oikonomou, Georgia, et al.
Publicado: (2023)

Allele-specific quantification of human leukocyte antigen transcript isoforms by nanopore sequencing
por: Hughes, Andrew E. O., et al.
Publicado: (2023)

Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human
por: Wagner, James R., et al.
Publicado: (2010)

Benchmarking the Human Leukocyte Antigen Typing Performance of Three Assays and Seven Next-Generation Sequencing-Based Algorithms
por: Liu, Ping, et al.
Publicado: (2021)

Using high-resolution human leukocyte antigen typing of 11,423 randomized unrelated individuals to determine allelic varieties, deduce probable human leukocyte antigen haplotypes, and observe linkage disequilibria between human leukocyte antigen-B and-C and human leukocyte antigen-DRB1 and-DQB1 alleles in the Taiwanese Chinese population
por: Yang, Kuo-Liang, et al.
Publicado: (2017)

Comments on: frequency of alleles and haplotypes of the human leukocyte antigen system in Bauru, São Paulo
por: Silva, Sônia Maria Usó Ruiz
Publicado: (2014)

Frequency of alleles and haplotypes of the human leukocyte antigen system in Bauru São Paulo, Brazil
por: Salvadori, Luana de Cassia, et al.
Publicado: (2014)

Human Leukocyte Antigen-Class I Alleles and the Autoreactive T Cell Response in Psoriasis Pathogenesis
por: Prinz, Jörg Christoph
Publicado: (2018)

Classical Human Leukocyte Antigen Alleles and C4 Haplotypes Are Not Significantly Associated With Depression
por: Glanville, Kylie P., et al.
Publicado: (2020)

Human Leukocyte Antigens -DQA1 and -DQB1 Alleles in Patients With Common Warts
por: Sánchez-Barrientos, Grazia, et al.
Publicado: (2021)

Genetic Association between Farrowing Rates and Swine Leukocyte Antigen Alleles or Haplotypes in Microminipigs
por: Ando, Asako, et al.
Publicado: (2022)

Genomic prediction of relapse in recipients of allogeneic haematopoietic stem cell transplantation
por: Ritari, J., et al.
Publicado: (2018)

Using multi-step proposal distribution for improved MCMC convergence in Bayesian network structure learning
por: Larjo, Antti, et al.
Publicado: (2015)

A New Human Leukocyte Antigen Typing Algorithm Combined With Currently Available Genotyping Tools Based on Next-Generation Sequencing Data and Guidelines to Select the Most Likely Human Leukocyte Antigen Genotype
por: Lee, Miseon, et al.
Publicado: (2021)

Methods to improve the accuracy of next-generation sequencing
por: Cheng, Chu, et al.
Publicado: (2023)

The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts
por: Wagner, James R, et al.
Publicado: (2014)

Importance of Human Leukocyte Antigen (HLA) Class I and II Alleles on the Risk of Multiple Sclerosis
por: Link, Jenny, et al.
Publicado: (2012)

Effect of human leukocyte antigen heterozygosity on infectious disease outcome: The need for allele-specific measures
por: Lipsitch, Marc, et al.
Publicado: (2003)

Cannot write session to /tmp/vufind_sessions/sess_j0oppvd782c10l71jvdhpag1gt