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Beneficial mutation-selection dynamics in finite asexual populations: a free boundary approach

Using a free boundary approach based on an analogy with ice melting models, we propose a deterministic PDE framework to describe the dynamics of fitness distributions in the presence of beneficial mutations with non-epistatic effects on fitness. Contrarily to most approaches based on deterministic m...

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Detalles Bibliográficos
Autores principales: Roques, Lionel, Garnier, Jimmy, Martin, Guillaume
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5736637/
https://www.ncbi.nlm.nih.gov/pubmed/29259180
http://dx.doi.org/10.1038/s41598-017-17212-5
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author Roques, Lionel
Garnier, Jimmy
Martin, Guillaume
author_facet Roques, Lionel
Garnier, Jimmy
Martin, Guillaume
author_sort Roques, Lionel
collection PubMed
description Using a free boundary approach based on an analogy with ice melting models, we propose a deterministic PDE framework to describe the dynamics of fitness distributions in the presence of beneficial mutations with non-epistatic effects on fitness. Contrarily to most approaches based on deterministic models, our framework does not rely on an infinite population size assumption, and successfully captures the transient as well as the long time dynamics of fitness distributions. In particular, consistently with stochastic individual-based approaches or stochastic PDE approaches, it leads to a constant asymptotic rate of adaptation at large times, that most deterministic approaches failed to describe. We derive analytic formulas for the asymptotic rate of adaptation and the full asymptotic distribution of fitness. These formulas depend explicitly on the population size, and are shown to be accurate for a wide range of population sizes and mutation rates, compared to individual-based simulations. Although we were not able to derive an analytic description for the transient dynamics, numerical computations lead to accurate predictions and are computationally efficient compared to stochastic simulations. These computations show that the fitness distribution converges towards a travelling wave with constant speed, and whose profile can be computed analytically.
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spelling pubmed-57366372017-12-21 Beneficial mutation-selection dynamics in finite asexual populations: a free boundary approach Roques, Lionel Garnier, Jimmy Martin, Guillaume Sci Rep Article Using a free boundary approach based on an analogy with ice melting models, we propose a deterministic PDE framework to describe the dynamics of fitness distributions in the presence of beneficial mutations with non-epistatic effects on fitness. Contrarily to most approaches based on deterministic models, our framework does not rely on an infinite population size assumption, and successfully captures the transient as well as the long time dynamics of fitness distributions. In particular, consistently with stochastic individual-based approaches or stochastic PDE approaches, it leads to a constant asymptotic rate of adaptation at large times, that most deterministic approaches failed to describe. We derive analytic formulas for the asymptotic rate of adaptation and the full asymptotic distribution of fitness. These formulas depend explicitly on the population size, and are shown to be accurate for a wide range of population sizes and mutation rates, compared to individual-based simulations. Although we were not able to derive an analytic description for the transient dynamics, numerical computations lead to accurate predictions and are computationally efficient compared to stochastic simulations. These computations show that the fitness distribution converges towards a travelling wave with constant speed, and whose profile can be computed analytically. Nature Publishing Group UK 2017-12-19 /pmc/articles/PMC5736637/ /pubmed/29259180 http://dx.doi.org/10.1038/s41598-017-17212-5 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Roques, Lionel
Garnier, Jimmy
Martin, Guillaume
Beneficial mutation-selection dynamics in finite asexual populations: a free boundary approach
title Beneficial mutation-selection dynamics in finite asexual populations: a free boundary approach
title_full Beneficial mutation-selection dynamics in finite asexual populations: a free boundary approach
title_fullStr Beneficial mutation-selection dynamics in finite asexual populations: a free boundary approach
title_full_unstemmed Beneficial mutation-selection dynamics in finite asexual populations: a free boundary approach
title_short Beneficial mutation-selection dynamics in finite asexual populations: a free boundary approach
title_sort beneficial mutation-selection dynamics in finite asexual populations: a free boundary approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5736637/
https://www.ncbi.nlm.nih.gov/pubmed/29259180
http://dx.doi.org/10.1038/s41598-017-17212-5
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