Indexcov: fast coverage quality control for whole-genome sequencing

The BAM and CRAM formats provide a supplementary linear index that facilitates rapid access to sequence alignments in arbitrary genomic regions. Comparing consecutive entries in a BAM or CRAM index allows one to infer the number of alignment records per genomic region for use as an effective proxy o...

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Detalles Bibliográficos
Autores principales: Pedersen, Brent S, Collins, Ryan L, Talkowski, Michael E, Quinlan, Aaron R
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Technical Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737511/
https://www.ncbi.nlm.nih.gov/pubmed/29048539
http://dx.doi.org/10.1093/gigascience/gix090

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737511/
https://www.ncbi.nlm.nih.gov/pubmed/29048539
http://dx.doi.org/10.1093/gigascience/gix090

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