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Using single-cell multiple omics approaches to resolve tumor heterogeneity

It has become increasingly clear that both normal and cancer tissues are composed of heterogeneous populations. Genetic variation can be attributed to the downstream effects of inherited mutations, environmental factors, or inaccurately resolved errors in transcription and replication. When lesions...

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Detalles Bibliográficos
Autores principales: Ortega, Michael A., Poirion, Olivier, Zhu, Xun, Huang, Sijia, Wolfgruber, Thomas K., Sebra, Robert, Garmire, Lana X.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5746494/
https://www.ncbi.nlm.nih.gov/pubmed/29285690
http://dx.doi.org/10.1186/s40169-017-0177-y
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author Ortega, Michael A.
Poirion, Olivier
Zhu, Xun
Huang, Sijia
Wolfgruber, Thomas K.
Sebra, Robert
Garmire, Lana X.
author_facet Ortega, Michael A.
Poirion, Olivier
Zhu, Xun
Huang, Sijia
Wolfgruber, Thomas K.
Sebra, Robert
Garmire, Lana X.
author_sort Ortega, Michael A.
collection PubMed
description It has become increasingly clear that both normal and cancer tissues are composed of heterogeneous populations. Genetic variation can be attributed to the downstream effects of inherited mutations, environmental factors, or inaccurately resolved errors in transcription and replication. When lesions occur in regions that confer a proliferative advantage, it can support clonal expansion, subclonal variation, and neoplastic progression. In this manner, the complex heterogeneous microenvironment of a tumour promotes the likelihood of angiogenesis and metastasis. Recent advances in next-generation sequencing and computational biology have utilized single-cell applications to build deep profiles of individual cells that are otherwise masked in bulk profiling. In addition, the development of new techniques for combining single-cell multi-omic strategies is providing a more precise understanding of factors contributing to cellular identity, function, and growth. Continuing advancements in single-cell technology and computational deconvolution of data will be critical for reconstructing patient specific intra-tumour features and developing more personalized cancer treatments.
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spelling pubmed-57464942018-01-19 Using single-cell multiple omics approaches to resolve tumor heterogeneity Ortega, Michael A. Poirion, Olivier Zhu, Xun Huang, Sijia Wolfgruber, Thomas K. Sebra, Robert Garmire, Lana X. Clin Transl Med Review It has become increasingly clear that both normal and cancer tissues are composed of heterogeneous populations. Genetic variation can be attributed to the downstream effects of inherited mutations, environmental factors, or inaccurately resolved errors in transcription and replication. When lesions occur in regions that confer a proliferative advantage, it can support clonal expansion, subclonal variation, and neoplastic progression. In this manner, the complex heterogeneous microenvironment of a tumour promotes the likelihood of angiogenesis and metastasis. Recent advances in next-generation sequencing and computational biology have utilized single-cell applications to build deep profiles of individual cells that are otherwise masked in bulk profiling. In addition, the development of new techniques for combining single-cell multi-omic strategies is providing a more precise understanding of factors contributing to cellular identity, function, and growth. Continuing advancements in single-cell technology and computational deconvolution of data will be critical for reconstructing patient specific intra-tumour features and developing more personalized cancer treatments. Springer Berlin Heidelberg 2017-12-28 /pmc/articles/PMC5746494/ /pubmed/29285690 http://dx.doi.org/10.1186/s40169-017-0177-y Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Review
Ortega, Michael A.
Poirion, Olivier
Zhu, Xun
Huang, Sijia
Wolfgruber, Thomas K.
Sebra, Robert
Garmire, Lana X.
Using single-cell multiple omics approaches to resolve tumor heterogeneity
title Using single-cell multiple omics approaches to resolve tumor heterogeneity
title_full Using single-cell multiple omics approaches to resolve tumor heterogeneity
title_fullStr Using single-cell multiple omics approaches to resolve tumor heterogeneity
title_full_unstemmed Using single-cell multiple omics approaches to resolve tumor heterogeneity
title_short Using single-cell multiple omics approaches to resolve tumor heterogeneity
title_sort using single-cell multiple omics approaches to resolve tumor heterogeneity
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5746494/
https://www.ncbi.nlm.nih.gov/pubmed/29285690
http://dx.doi.org/10.1186/s40169-017-0177-y
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