Tuning iteration space slicing based tiled multi-core code implementing Nussinov’s RNA folding

BACKGROUND: RNA folding is an ongoing compute-intensive task of bioinformatics. Parallelization and improving code locality for this kind of algorithms is one of the most relevant areas in computational biology. Fortunately, RNA secondary structure approaches, such as Nussinov’s recurrence, involve...

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Detalles Bibliográficos
Autores principales: Palkowski, Marek, Bielecki, Wlodzimierz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5769393/
https://www.ncbi.nlm.nih.gov/pubmed/29334891
http://dx.doi.org/10.1186/s12859-018-2008-6

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5769393/
https://www.ncbi.nlm.nih.gov/pubmed/29334891
http://dx.doi.org/10.1186/s12859-018-2008-6

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