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Tuning iteration space slicing based tiled multi-core code implementing Nussinov’s RNA folding
BACKGROUND: RNA folding is an ongoing compute-intensive task of bioinformatics. Parallelization and improving code locality for this kind of algorithms is one of the most relevant areas in computational biology. Fortunately, RNA secondary structure approaches, such as Nussinov’s recurrence, involve...
Autores principales: | Palkowski, Marek, Bielecki, Wlodzimierz |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5769393/ https://www.ncbi.nlm.nih.gov/pubmed/29334891 http://dx.doi.org/10.1186/s12859-018-2008-6 |
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