Impact of the choice of reference genome on the ability of the core genome SNV methodology to distinguish strains of Salmonella enterica serovar Heidelberg

Salmonella enterica serovar Heidelberg (S. Heidelberg) is one of the top serovars causing human salmonellosis. The core genome single nucleotide variant pipeline (cgSNV) is one of several whole genome based sequence typing methods used for the laboratory investigation of foodborne pathogens. SNV det...

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Detalles Bibliográficos
Autores principales: Usongo, Valentine, Berry, Chrystal, Yousfi, Khadidja, Doualla-Bell, Florence, Labbé, Genevieve, Johnson, Roger, Fournier, Eric, Nadon, Celine, Goodridge, Lawrence, Bekal, Sadjia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798827/
https://www.ncbi.nlm.nih.gov/pubmed/29401524
http://dx.doi.org/10.1371/journal.pone.0192233

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798827/
https://www.ncbi.nlm.nih.gov/pubmed/29401524
http://dx.doi.org/10.1371/journal.pone.0192233

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