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Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling

Polymerising filaments generate force against an obstacle, as in, e.g., microtubule-kinetochore interactions in the eukaryotic cell. Earlier studies of this problem have not included explicit three-dimensional monomer diffusion, and consequently, missed out on two important aspects: (i) the barrier,...

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Autores principales: Valiyakath, Jemseena, Gopalakrishnan, Manoj
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5802839/
https://www.ncbi.nlm.nih.gov/pubmed/29410507
http://dx.doi.org/10.1038/s41598-018-20259-7
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author Valiyakath, Jemseena
Gopalakrishnan, Manoj
author_facet Valiyakath, Jemseena
Gopalakrishnan, Manoj
author_sort Valiyakath, Jemseena
collection PubMed
description Polymerising filaments generate force against an obstacle, as in, e.g., microtubule-kinetochore interactions in the eukaryotic cell. Earlier studies of this problem have not included explicit three-dimensional monomer diffusion, and consequently, missed out on two important aspects: (i) the barrier, even when it is far from the polymers, affects free diffusion of monomers and reduces their adsorption at the tips, while (ii) parallel filaments could interact through the monomer density field (“diffusive coupling”), leading to negative interference between them. In our study, both these effects are included and their consequences investigated in detail. A mathematical treatment based on a set of continuum Fokker-Planck equations for combined filament-wall dynamics suggests that the barrier-induced monomer depletion reduces the growth velocity and also the stall force, while the total force produced by many filaments remains additive. However, Brownian dynamics simulations show that the linear force-number scaling holds only when the filaments are far apart; when they are arranged close together, forming a bundle, sublinear scaling of force with number appears, which could be attributed to diffusive interaction between the growing polymer tips.
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spelling pubmed-58028392018-02-14 Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling Valiyakath, Jemseena Gopalakrishnan, Manoj Sci Rep Article Polymerising filaments generate force against an obstacle, as in, e.g., microtubule-kinetochore interactions in the eukaryotic cell. Earlier studies of this problem have not included explicit three-dimensional monomer diffusion, and consequently, missed out on two important aspects: (i) the barrier, even when it is far from the polymers, affects free diffusion of monomers and reduces their adsorption at the tips, while (ii) parallel filaments could interact through the monomer density field (“diffusive coupling”), leading to negative interference between them. In our study, both these effects are included and their consequences investigated in detail. A mathematical treatment based on a set of continuum Fokker-Planck equations for combined filament-wall dynamics suggests that the barrier-induced monomer depletion reduces the growth velocity and also the stall force, while the total force produced by many filaments remains additive. However, Brownian dynamics simulations show that the linear force-number scaling holds only when the filaments are far apart; when they are arranged close together, forming a bundle, sublinear scaling of force with number appears, which could be attributed to diffusive interaction between the growing polymer tips. Nature Publishing Group UK 2018-02-06 /pmc/articles/PMC5802839/ /pubmed/29410507 http://dx.doi.org/10.1038/s41598-018-20259-7 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Valiyakath, Jemseena
Gopalakrishnan, Manoj
Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling
title Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling
title_full Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling
title_fullStr Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling
title_full_unstemmed Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling
title_short Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling
title_sort polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5802839/
https://www.ncbi.nlm.nih.gov/pubmed/29410507
http://dx.doi.org/10.1038/s41598-018-20259-7
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