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Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling
Polymerising filaments generate force against an obstacle, as in, e.g., microtubule-kinetochore interactions in the eukaryotic cell. Earlier studies of this problem have not included explicit three-dimensional monomer diffusion, and consequently, missed out on two important aspects: (i) the barrier,...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5802839/ https://www.ncbi.nlm.nih.gov/pubmed/29410507 http://dx.doi.org/10.1038/s41598-018-20259-7 |
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author | Valiyakath, Jemseena Gopalakrishnan, Manoj |
author_facet | Valiyakath, Jemseena Gopalakrishnan, Manoj |
author_sort | Valiyakath, Jemseena |
collection | PubMed |
description | Polymerising filaments generate force against an obstacle, as in, e.g., microtubule-kinetochore interactions in the eukaryotic cell. Earlier studies of this problem have not included explicit three-dimensional monomer diffusion, and consequently, missed out on two important aspects: (i) the barrier, even when it is far from the polymers, affects free diffusion of monomers and reduces their adsorption at the tips, while (ii) parallel filaments could interact through the monomer density field (“diffusive coupling”), leading to negative interference between them. In our study, both these effects are included and their consequences investigated in detail. A mathematical treatment based on a set of continuum Fokker-Planck equations for combined filament-wall dynamics suggests that the barrier-induced monomer depletion reduces the growth velocity and also the stall force, while the total force produced by many filaments remains additive. However, Brownian dynamics simulations show that the linear force-number scaling holds only when the filaments are far apart; when they are arranged close together, forming a bundle, sublinear scaling of force with number appears, which could be attributed to diffusive interaction between the growing polymer tips. |
format | Online Article Text |
id | pubmed-5802839 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-58028392018-02-14 Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling Valiyakath, Jemseena Gopalakrishnan, Manoj Sci Rep Article Polymerising filaments generate force against an obstacle, as in, e.g., microtubule-kinetochore interactions in the eukaryotic cell. Earlier studies of this problem have not included explicit three-dimensional monomer diffusion, and consequently, missed out on two important aspects: (i) the barrier, even when it is far from the polymers, affects free diffusion of monomers and reduces their adsorption at the tips, while (ii) parallel filaments could interact through the monomer density field (“diffusive coupling”), leading to negative interference between them. In our study, both these effects are included and their consequences investigated in detail. A mathematical treatment based on a set of continuum Fokker-Planck equations for combined filament-wall dynamics suggests that the barrier-induced monomer depletion reduces the growth velocity and also the stall force, while the total force produced by many filaments remains additive. However, Brownian dynamics simulations show that the linear force-number scaling holds only when the filaments are far apart; when they are arranged close together, forming a bundle, sublinear scaling of force with number appears, which could be attributed to diffusive interaction between the growing polymer tips. Nature Publishing Group UK 2018-02-06 /pmc/articles/PMC5802839/ /pubmed/29410507 http://dx.doi.org/10.1038/s41598-018-20259-7 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Valiyakath, Jemseena Gopalakrishnan, Manoj Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling |
title | Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling |
title_full | Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling |
title_fullStr | Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling |
title_full_unstemmed | Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling |
title_short | Polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling |
title_sort | polymerisation force of a rigid filament bundle: diffusive interaction leads to sublinear force-number scaling |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5802839/ https://www.ncbi.nlm.nih.gov/pubmed/29410507 http://dx.doi.org/10.1038/s41598-018-20259-7 |
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