Cargando…
Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes
GPR142 (G protein receptor 142) is a novel orphan GPCR (G protein coupled receptor) belonging to “Class A” of GPCR family and expressed in β cells of pancreas. In this study, we reported the structure based virtual screening to identify the hit compounds which can be developed as leads for potential...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5817085/ https://www.ncbi.nlm.nih.gov/pubmed/29492402 http://dx.doi.org/10.3389/fchem.2018.00023 |
_version_ | 1783300804235493376 |
---|---|
author | Kaushik, Aman C. Kumar, Sanjay Wei, Dong Q. Sahi, Shakti |
author_facet | Kaushik, Aman C. Kumar, Sanjay Wei, Dong Q. Sahi, Shakti |
author_sort | Kaushik, Aman C. |
collection | PubMed |
description | GPR142 (G protein receptor 142) is a novel orphan GPCR (G protein coupled receptor) belonging to “Class A” of GPCR family and expressed in β cells of pancreas. In this study, we reported the structure based virtual screening to identify the hit compounds which can be developed as leads for potential agonists. The results were validated through induced fit docking, pharmacophore modeling, and system biology approaches. Since, there is no solved crystal structure of GPR142, we attempted to predict the 3D structure followed by validation and then identification of active site using threading and ab initio methods. Also, structure based virtual screening was performed against a total of 1171519 compounds from different libraries and only top 20 best hit compounds were screened and analyzed. Moreover, the biochemical pathway of GPR142 complex with screened compound2 was also designed and compared with experimental data. Interestingly, compound2 showed an increase in insulin production via Gq mediated signaling pathway suggesting the possible role of novel GPR142 agonists in therapy against type 2 diabetes. |
format | Online Article Text |
id | pubmed-5817085 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-58170852018-02-28 Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes Kaushik, Aman C. Kumar, Sanjay Wei, Dong Q. Sahi, Shakti Front Chem Chemistry GPR142 (G protein receptor 142) is a novel orphan GPCR (G protein coupled receptor) belonging to “Class A” of GPCR family and expressed in β cells of pancreas. In this study, we reported the structure based virtual screening to identify the hit compounds which can be developed as leads for potential agonists. The results were validated through induced fit docking, pharmacophore modeling, and system biology approaches. Since, there is no solved crystal structure of GPR142, we attempted to predict the 3D structure followed by validation and then identification of active site using threading and ab initio methods. Also, structure based virtual screening was performed against a total of 1171519 compounds from different libraries and only top 20 best hit compounds were screened and analyzed. Moreover, the biochemical pathway of GPR142 complex with screened compound2 was also designed and compared with experimental data. Interestingly, compound2 showed an increase in insulin production via Gq mediated signaling pathway suggesting the possible role of novel GPR142 agonists in therapy against type 2 diabetes. Frontiers Media S.A. 2018-02-14 /pmc/articles/PMC5817085/ /pubmed/29492402 http://dx.doi.org/10.3389/fchem.2018.00023 Text en Copyright © 2018 Kaushik, Kumar, Wei and Sahi. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Chemistry Kaushik, Aman C. Kumar, Sanjay Wei, Dong Q. Sahi, Shakti Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes |
title | Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes |
title_full | Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes |
title_fullStr | Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes |
title_full_unstemmed | Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes |
title_short | Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes |
title_sort | structure based virtual screening studies to identify novel potential compounds for gpr142 and their relative dynamic analysis for study of type 2 diabetes |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5817085/ https://www.ncbi.nlm.nih.gov/pubmed/29492402 http://dx.doi.org/10.3389/fchem.2018.00023 |
work_keys_str_mv | AT kaushikamanc structurebasedvirtualscreeningstudiestoidentifynovelpotentialcompoundsforgpr142andtheirrelativedynamicanalysisforstudyoftype2diabetes AT kumarsanjay structurebasedvirtualscreeningstudiestoidentifynovelpotentialcompoundsforgpr142andtheirrelativedynamicanalysisforstudyoftype2diabetes AT weidongq structurebasedvirtualscreeningstudiestoidentifynovelpotentialcompoundsforgpr142andtheirrelativedynamicanalysisforstudyoftype2diabetes AT sahishakti structurebasedvirtualscreeningstudiestoidentifynovelpotentialcompoundsforgpr142andtheirrelativedynamicanalysisforstudyoftype2diabetes |