Cargando…
Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis
With the advent of synthetic biology in medicine many synthetic or engineered proteins have made their way to therapeutics and diagnostics. In this paper, the downstream gene network of CD14-TNF-EGFR pathway in leishmaniasis, a tropical disease, is reconstructed. Network analysis showed that NFkB li...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5823942/ https://www.ncbi.nlm.nih.gov/pubmed/29472639 http://dx.doi.org/10.1038/s41598-018-21840-w |
_version_ | 1783301960464596992 |
---|---|
author | Mol, Milsee Kosey, Dipali Boppana, Ramanamurthy Singh, Shailza |
author_facet | Mol, Milsee Kosey, Dipali Boppana, Ramanamurthy Singh, Shailza |
author_sort | Mol, Milsee |
collection | PubMed |
description | With the advent of synthetic biology in medicine many synthetic or engineered proteins have made their way to therapeutics and diagnostics. In this paper, the downstream gene network of CD14-TNF-EGFR pathway in leishmaniasis, a tropical disease, is reconstructed. Network analysis showed that NFkB links the signaling and gene network, used as a point of intervention through a synthetic circuit embedded within the negative autoregulatory feedback loop. A chimeric protein kinase C (PKC) is incorporated in the synthetic circuit, under the transcriptional regulation of Lac repressor and IPTG, as an inducer. The chimeric PKC_ζα via IκKb phosphorylation activates NFκB, and modulates the gene expression from an anti-inflammatory to a pro-inflammatory phenotype in in vitro L. major infected macrophage model. This is the first ever report of a synthetic device construction in leishmania. |
format | Online Article Text |
id | pubmed-5823942 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-58239422018-03-01 Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis Mol, Milsee Kosey, Dipali Boppana, Ramanamurthy Singh, Shailza Sci Rep Article With the advent of synthetic biology in medicine many synthetic or engineered proteins have made their way to therapeutics and diagnostics. In this paper, the downstream gene network of CD14-TNF-EGFR pathway in leishmaniasis, a tropical disease, is reconstructed. Network analysis showed that NFkB links the signaling and gene network, used as a point of intervention through a synthetic circuit embedded within the negative autoregulatory feedback loop. A chimeric protein kinase C (PKC) is incorporated in the synthetic circuit, under the transcriptional regulation of Lac repressor and IPTG, as an inducer. The chimeric PKC_ζα via IκKb phosphorylation activates NFκB, and modulates the gene expression from an anti-inflammatory to a pro-inflammatory phenotype in in vitro L. major infected macrophage model. This is the first ever report of a synthetic device construction in leishmania. Nature Publishing Group UK 2018-02-22 /pmc/articles/PMC5823942/ /pubmed/29472639 http://dx.doi.org/10.1038/s41598-018-21840-w Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Mol, Milsee Kosey, Dipali Boppana, Ramanamurthy Singh, Shailza Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis |
title | Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis |
title_full | Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis |
title_fullStr | Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis |
title_full_unstemmed | Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis |
title_short | Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis |
title_sort | transcription factor target gene network governs the logical abstraction analysis of the synthetic circuit in leishmaniasis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5823942/ https://www.ncbi.nlm.nih.gov/pubmed/29472639 http://dx.doi.org/10.1038/s41598-018-21840-w |
work_keys_str_mv | AT molmilsee transcriptionfactortargetgenenetworkgovernsthelogicalabstractionanalysisofthesyntheticcircuitinleishmaniasis AT koseydipali transcriptionfactortargetgenenetworkgovernsthelogicalabstractionanalysisofthesyntheticcircuitinleishmaniasis AT boppanaramanamurthy transcriptionfactortargetgenenetworkgovernsthelogicalabstractionanalysisofthesyntheticcircuitinleishmaniasis AT singhshailza transcriptionfactortargetgenenetworkgovernsthelogicalabstractionanalysisofthesyntheticcircuitinleishmaniasis |