Cargando…

Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis

With the advent of synthetic biology in medicine many synthetic or engineered proteins have made their way to therapeutics and diagnostics. In this paper, the downstream gene network of CD14-TNF-EGFR pathway in leishmaniasis, a tropical disease, is reconstructed. Network analysis showed that NFkB li...

Descripción completa

Detalles Bibliográficos
Autores principales: Mol, Milsee, Kosey, Dipali, Boppana, Ramanamurthy, Singh, Shailza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5823942/
https://www.ncbi.nlm.nih.gov/pubmed/29472639
http://dx.doi.org/10.1038/s41598-018-21840-w
_version_ 1783301960464596992
author Mol, Milsee
Kosey, Dipali
Boppana, Ramanamurthy
Singh, Shailza
author_facet Mol, Milsee
Kosey, Dipali
Boppana, Ramanamurthy
Singh, Shailza
author_sort Mol, Milsee
collection PubMed
description With the advent of synthetic biology in medicine many synthetic or engineered proteins have made their way to therapeutics and diagnostics. In this paper, the downstream gene network of CD14-TNF-EGFR pathway in leishmaniasis, a tropical disease, is reconstructed. Network analysis showed that NFkB links the signaling and gene network, used as a point of intervention through a synthetic circuit embedded within the negative autoregulatory feedback loop. A chimeric protein kinase C (PKC) is incorporated in the synthetic circuit, under the transcriptional regulation of Lac repressor and IPTG, as an inducer. The chimeric PKC_ζα via IκKb phosphorylation activates NFκB, and modulates the gene expression from an anti-inflammatory to a pro-inflammatory phenotype in in vitro L. major infected macrophage model. This is the first ever report of a synthetic device construction in leishmania.
format Online
Article
Text
id pubmed-5823942
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-58239422018-03-01 Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis Mol, Milsee Kosey, Dipali Boppana, Ramanamurthy Singh, Shailza Sci Rep Article With the advent of synthetic biology in medicine many synthetic or engineered proteins have made their way to therapeutics and diagnostics. In this paper, the downstream gene network of CD14-TNF-EGFR pathway in leishmaniasis, a tropical disease, is reconstructed. Network analysis showed that NFkB links the signaling and gene network, used as a point of intervention through a synthetic circuit embedded within the negative autoregulatory feedback loop. A chimeric protein kinase C (PKC) is incorporated in the synthetic circuit, under the transcriptional regulation of Lac repressor and IPTG, as an inducer. The chimeric PKC_ζα via IκKb phosphorylation activates NFκB, and modulates the gene expression from an anti-inflammatory to a pro-inflammatory phenotype in in vitro L. major infected macrophage model. This is the first ever report of a synthetic device construction in leishmania. Nature Publishing Group UK 2018-02-22 /pmc/articles/PMC5823942/ /pubmed/29472639 http://dx.doi.org/10.1038/s41598-018-21840-w Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Mol, Milsee
Kosey, Dipali
Boppana, Ramanamurthy
Singh, Shailza
Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis
title Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis
title_full Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis
title_fullStr Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis
title_full_unstemmed Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis
title_short Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis
title_sort transcription factor target gene network governs the logical abstraction analysis of the synthetic circuit in leishmaniasis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5823942/
https://www.ncbi.nlm.nih.gov/pubmed/29472639
http://dx.doi.org/10.1038/s41598-018-21840-w
work_keys_str_mv AT molmilsee transcriptionfactortargetgenenetworkgovernsthelogicalabstractionanalysisofthesyntheticcircuitinleishmaniasis
AT koseydipali transcriptionfactortargetgenenetworkgovernsthelogicalabstractionanalysisofthesyntheticcircuitinleishmaniasis
AT boppanaramanamurthy transcriptionfactortargetgenenetworkgovernsthelogicalabstractionanalysisofthesyntheticcircuitinleishmaniasis
AT singhshailza transcriptionfactortargetgenenetworkgovernsthelogicalabstractionanalysisofthesyntheticcircuitinleishmaniasis