Introducing difference recurrence relations for faster semi-global alignment of long sequences

BACKGROUND: The read length of single-molecule DNA sequencers is reaching 1 Mb. Popular alignment software tools widely used for analyzing such long reads often take advantage of single-instruction multiple-data (SIMD) operations to accelerate calculation of dynamic programming (DP) matrices in the...

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Detalles Bibliográficos
Autores principales: Suzuki, Hajime, Kasahara, Masahiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Methodology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5836832/
https://www.ncbi.nlm.nih.gov/pubmed/29504909
http://dx.doi.org/10.1186/s12859-018-2014-8

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5836832/
https://www.ncbi.nlm.nih.gov/pubmed/29504909
http://dx.doi.org/10.1186/s12859-018-2014-8

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