Fast and efficient short read mapping based on a succinct hash index
BACKGROUND: Various indexing techniques have been applied by next generation sequencing read mapping tools. The choice of a particular data structure is a trade-off between memory consumption, mapping throughput, and construction time. RESULTS: We present the succinct hash index – a novel data struc...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5845352/ https://www.ncbi.nlm.nih.gov/pubmed/29523083 http://dx.doi.org/10.1186/s12859-018-2094-5 |