Fast and efficient short read mapping based on a succinct hash index

BACKGROUND: Various indexing techniques have been applied by next generation sequencing read mapping tools. The choice of a particular data structure is a trade-off between memory consumption, mapping throughput, and construction time. RESULTS: We present the succinct hash index – a novel data struc...

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Detalles Bibliográficos
Autores principales: Zhang, Haowen, Chan, Yuandong, Fan, Kaichao, Schmidt, Bertil, Liu, Weiguo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5845352/
https://www.ncbi.nlm.nih.gov/pubmed/29523083
http://dx.doi.org/10.1186/s12859-018-2094-5