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A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model
Intratracheal administration of bleomycin induces fibrosis in the lung, which is mainly assessed by histopathological grading that is subjective. Current literature highlights the need of reproducible and quantitative pulmonary fibrosis analysis. If some quantitative studies looked at fibrosis param...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5856260/ https://www.ncbi.nlm.nih.gov/pubmed/29547661 http://dx.doi.org/10.1371/journal.pone.0193057 |
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author | Seger, Shanon Stritt, Manuel Vezzali, Enrico Nayler, Oliver Hess, Patrick Groenen, Peter M. A. Stalder, Anna K. |
author_facet | Seger, Shanon Stritt, Manuel Vezzali, Enrico Nayler, Oliver Hess, Patrick Groenen, Peter M. A. Stalder, Anna K. |
author_sort | Seger, Shanon |
collection | PubMed |
description | Intratracheal administration of bleomycin induces fibrosis in the lung, which is mainly assessed by histopathological grading that is subjective. Current literature highlights the need of reproducible and quantitative pulmonary fibrosis analysis. If some quantitative studies looked at fibrosis parameters separately, none of them quantitatively assessed both aspects: lung tissue remodeling and collagenization. To ensure reliable quantification, support vector machine learning was used on digitalized images to design a fully automated method that analyzes two important aspects of lung fibrosis: (i) areas having substantial tissue remodeling with appearance of dense fibrotic masses and (ii) collagen deposition. Fibrotic masses were identified on low magnification images and collagen detection was performed at high magnification. To insure a fully automated application the tissue classifier was trained on several independent studies that were performed over a period of four years. The detection method generates two different values that can be used to quantify lung fibrosis development: (i) percent area of fibrotic masses and (ii) percent of alveolar collagen. These two parameters were validated using independent studies from bleomycin- and saline-treated animals. A significant change of these lung fibrosis quantification parameters- increased amount of fibrotic masses and increased collagen deposition- were observed upon intratracheal administration of bleomycin and subsequent significant beneficial treatments effects were observed with BIBF-1120 and pirfenidone. |
format | Online Article Text |
id | pubmed-5856260 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-58562602018-03-28 A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model Seger, Shanon Stritt, Manuel Vezzali, Enrico Nayler, Oliver Hess, Patrick Groenen, Peter M. A. Stalder, Anna K. PLoS One Research Article Intratracheal administration of bleomycin induces fibrosis in the lung, which is mainly assessed by histopathological grading that is subjective. Current literature highlights the need of reproducible and quantitative pulmonary fibrosis analysis. If some quantitative studies looked at fibrosis parameters separately, none of them quantitatively assessed both aspects: lung tissue remodeling and collagenization. To ensure reliable quantification, support vector machine learning was used on digitalized images to design a fully automated method that analyzes two important aspects of lung fibrosis: (i) areas having substantial tissue remodeling with appearance of dense fibrotic masses and (ii) collagen deposition. Fibrotic masses were identified on low magnification images and collagen detection was performed at high magnification. To insure a fully automated application the tissue classifier was trained on several independent studies that were performed over a period of four years. The detection method generates two different values that can be used to quantify lung fibrosis development: (i) percent area of fibrotic masses and (ii) percent of alveolar collagen. These two parameters were validated using independent studies from bleomycin- and saline-treated animals. A significant change of these lung fibrosis quantification parameters- increased amount of fibrotic masses and increased collagen deposition- were observed upon intratracheal administration of bleomycin and subsequent significant beneficial treatments effects were observed with BIBF-1120 and pirfenidone. Public Library of Science 2018-03-16 /pmc/articles/PMC5856260/ /pubmed/29547661 http://dx.doi.org/10.1371/journal.pone.0193057 Text en © 2018 Seger et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Seger, Shanon Stritt, Manuel Vezzali, Enrico Nayler, Oliver Hess, Patrick Groenen, Peter M. A. Stalder, Anna K. A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model |
title | A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model |
title_full | A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model |
title_fullStr | A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model |
title_full_unstemmed | A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model |
title_short | A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model |
title_sort | fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5856260/ https://www.ncbi.nlm.nih.gov/pubmed/29547661 http://dx.doi.org/10.1371/journal.pone.0193057 |
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