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A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model

Intratracheal administration of bleomycin induces fibrosis in the lung, which is mainly assessed by histopathological grading that is subjective. Current literature highlights the need of reproducible and quantitative pulmonary fibrosis analysis. If some quantitative studies looked at fibrosis param...

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Autores principales: Seger, Shanon, Stritt, Manuel, Vezzali, Enrico, Nayler, Oliver, Hess, Patrick, Groenen, Peter M. A., Stalder, Anna K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5856260/
https://www.ncbi.nlm.nih.gov/pubmed/29547661
http://dx.doi.org/10.1371/journal.pone.0193057
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author Seger, Shanon
Stritt, Manuel
Vezzali, Enrico
Nayler, Oliver
Hess, Patrick
Groenen, Peter M. A.
Stalder, Anna K.
author_facet Seger, Shanon
Stritt, Manuel
Vezzali, Enrico
Nayler, Oliver
Hess, Patrick
Groenen, Peter M. A.
Stalder, Anna K.
author_sort Seger, Shanon
collection PubMed
description Intratracheal administration of bleomycin induces fibrosis in the lung, which is mainly assessed by histopathological grading that is subjective. Current literature highlights the need of reproducible and quantitative pulmonary fibrosis analysis. If some quantitative studies looked at fibrosis parameters separately, none of them quantitatively assessed both aspects: lung tissue remodeling and collagenization. To ensure reliable quantification, support vector machine learning was used on digitalized images to design a fully automated method that analyzes two important aspects of lung fibrosis: (i) areas having substantial tissue remodeling with appearance of dense fibrotic masses and (ii) collagen deposition. Fibrotic masses were identified on low magnification images and collagen detection was performed at high magnification. To insure a fully automated application the tissue classifier was trained on several independent studies that were performed over a period of four years. The detection method generates two different values that can be used to quantify lung fibrosis development: (i) percent area of fibrotic masses and (ii) percent of alveolar collagen. These two parameters were validated using independent studies from bleomycin- and saline-treated animals. A significant change of these lung fibrosis quantification parameters- increased amount of fibrotic masses and increased collagen deposition- were observed upon intratracheal administration of bleomycin and subsequent significant beneficial treatments effects were observed with BIBF-1120 and pirfenidone.
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spelling pubmed-58562602018-03-28 A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model Seger, Shanon Stritt, Manuel Vezzali, Enrico Nayler, Oliver Hess, Patrick Groenen, Peter M. A. Stalder, Anna K. PLoS One Research Article Intratracheal administration of bleomycin induces fibrosis in the lung, which is mainly assessed by histopathological grading that is subjective. Current literature highlights the need of reproducible and quantitative pulmonary fibrosis analysis. If some quantitative studies looked at fibrosis parameters separately, none of them quantitatively assessed both aspects: lung tissue remodeling and collagenization. To ensure reliable quantification, support vector machine learning was used on digitalized images to design a fully automated method that analyzes two important aspects of lung fibrosis: (i) areas having substantial tissue remodeling with appearance of dense fibrotic masses and (ii) collagen deposition. Fibrotic masses were identified on low magnification images and collagen detection was performed at high magnification. To insure a fully automated application the tissue classifier was trained on several independent studies that were performed over a period of four years. The detection method generates two different values that can be used to quantify lung fibrosis development: (i) percent area of fibrotic masses and (ii) percent of alveolar collagen. These two parameters were validated using independent studies from bleomycin- and saline-treated animals. A significant change of these lung fibrosis quantification parameters- increased amount of fibrotic masses and increased collagen deposition- were observed upon intratracheal administration of bleomycin and subsequent significant beneficial treatments effects were observed with BIBF-1120 and pirfenidone. Public Library of Science 2018-03-16 /pmc/articles/PMC5856260/ /pubmed/29547661 http://dx.doi.org/10.1371/journal.pone.0193057 Text en © 2018 Seger et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Seger, Shanon
Stritt, Manuel
Vezzali, Enrico
Nayler, Oliver
Hess, Patrick
Groenen, Peter M. A.
Stalder, Anna K.
A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model
title A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model
title_full A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model
title_fullStr A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model
title_full_unstemmed A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model
title_short A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model
title_sort fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5856260/
https://www.ncbi.nlm.nih.gov/pubmed/29547661
http://dx.doi.org/10.1371/journal.pone.0193057
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