Faucet: streaming de novo assembly graph construction

MOTIVATION: We present Faucet, a two-pass streaming algorithm for assembly graph construction. Faucet builds an assembly graph incrementally as each read is processed. Thus, reads need not be stored locally, as they can be processed while downloading data and then discarded. We demonstrate this func...

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Detalles Bibliográficos
Autores principales: Rozov, Roye, Goldshlager, Gil, Halperin, Eran, Shamir, Ron
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Special Issue: Recomb-Seq/Recomb-Ccb/Recomb-Cg
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870852/
https://www.ncbi.nlm.nih.gov/pubmed/29036597
http://dx.doi.org/10.1093/bioinformatics/btx471

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870852/
https://www.ncbi.nlm.nih.gov/pubmed/29036597
http://dx.doi.org/10.1093/bioinformatics/btx471

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