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HATRIC-based identification of receptors for orphan ligands
Cellular responses depend on the interactions of extracellular ligands, such as nutrients, growth factors, or drugs, with specific cell-surface receptors. The sensitivity of these interactions to non-physiological conditions, however, makes them challenging to study using in vitro assays. Here we pr...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5904110/ https://www.ncbi.nlm.nih.gov/pubmed/29666374 http://dx.doi.org/10.1038/s41467-018-03936-z |
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author | Sobotzki, Nadine Schafroth, Michael A. Rudnicka, Alina Koetemann, Anika Marty, Florian Goetze, Sandra Yamauchi, Yohei Carreira, Erick M. Wollscheid, Bernd |
author_facet | Sobotzki, Nadine Schafroth, Michael A. Rudnicka, Alina Koetemann, Anika Marty, Florian Goetze, Sandra Yamauchi, Yohei Carreira, Erick M. Wollscheid, Bernd |
author_sort | Sobotzki, Nadine |
collection | PubMed |
description | Cellular responses depend on the interactions of extracellular ligands, such as nutrients, growth factors, or drugs, with specific cell-surface receptors. The sensitivity of these interactions to non-physiological conditions, however, makes them challenging to study using in vitro assays. Here we present HATRIC-based ligand receptor capture (HATRIC-LRC), a chemoproteomic technology that successfully identifies target receptors for orphan ligands on living cells ranging from small molecules to intact viruses. HATRIC-LRC combines a click chemistry-based, protein-centric workflow with a water-soluble catalyst to capture ligand-receptor interactions at physiological pH from as few as 1 million cells. We show HATRIC-LRC utility for general antibody target validation within the native nanoscale organization of the surfaceome, as well as receptor identification for a small molecule ligand. HATRIC-LRC further enables the identification of complex extracellular interactomes, such as the host receptor panel for influenza A virus (IAV), the causative agent of the common flu. |
format | Online Article Text |
id | pubmed-5904110 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-59041102018-04-20 HATRIC-based identification of receptors for orphan ligands Sobotzki, Nadine Schafroth, Michael A. Rudnicka, Alina Koetemann, Anika Marty, Florian Goetze, Sandra Yamauchi, Yohei Carreira, Erick M. Wollscheid, Bernd Nat Commun Article Cellular responses depend on the interactions of extracellular ligands, such as nutrients, growth factors, or drugs, with specific cell-surface receptors. The sensitivity of these interactions to non-physiological conditions, however, makes them challenging to study using in vitro assays. Here we present HATRIC-based ligand receptor capture (HATRIC-LRC), a chemoproteomic technology that successfully identifies target receptors for orphan ligands on living cells ranging from small molecules to intact viruses. HATRIC-LRC combines a click chemistry-based, protein-centric workflow with a water-soluble catalyst to capture ligand-receptor interactions at physiological pH from as few as 1 million cells. We show HATRIC-LRC utility for general antibody target validation within the native nanoscale organization of the surfaceome, as well as receptor identification for a small molecule ligand. HATRIC-LRC further enables the identification of complex extracellular interactomes, such as the host receptor panel for influenza A virus (IAV), the causative agent of the common flu. Nature Publishing Group UK 2018-04-17 /pmc/articles/PMC5904110/ /pubmed/29666374 http://dx.doi.org/10.1038/s41467-018-03936-z Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Sobotzki, Nadine Schafroth, Michael A. Rudnicka, Alina Koetemann, Anika Marty, Florian Goetze, Sandra Yamauchi, Yohei Carreira, Erick M. Wollscheid, Bernd HATRIC-based identification of receptors for orphan ligands |
title | HATRIC-based identification of receptors for orphan ligands |
title_full | HATRIC-based identification of receptors for orphan ligands |
title_fullStr | HATRIC-based identification of receptors for orphan ligands |
title_full_unstemmed | HATRIC-based identification of receptors for orphan ligands |
title_short | HATRIC-based identification of receptors for orphan ligands |
title_sort | hatric-based identification of receptors for orphan ligands |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5904110/ https://www.ncbi.nlm.nih.gov/pubmed/29666374 http://dx.doi.org/10.1038/s41467-018-03936-z |
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