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HATRIC-based identification of receptors for orphan ligands

Cellular responses depend on the interactions of extracellular ligands, such as nutrients, growth factors, or drugs, with specific cell-surface receptors. The sensitivity of these interactions to non-physiological conditions, however, makes them challenging to study using in vitro assays. Here we pr...

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Autores principales: Sobotzki, Nadine, Schafroth, Michael A., Rudnicka, Alina, Koetemann, Anika, Marty, Florian, Goetze, Sandra, Yamauchi, Yohei, Carreira, Erick M., Wollscheid, Bernd
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5904110/
https://www.ncbi.nlm.nih.gov/pubmed/29666374
http://dx.doi.org/10.1038/s41467-018-03936-z
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author Sobotzki, Nadine
Schafroth, Michael A.
Rudnicka, Alina
Koetemann, Anika
Marty, Florian
Goetze, Sandra
Yamauchi, Yohei
Carreira, Erick M.
Wollscheid, Bernd
author_facet Sobotzki, Nadine
Schafroth, Michael A.
Rudnicka, Alina
Koetemann, Anika
Marty, Florian
Goetze, Sandra
Yamauchi, Yohei
Carreira, Erick M.
Wollscheid, Bernd
author_sort Sobotzki, Nadine
collection PubMed
description Cellular responses depend on the interactions of extracellular ligands, such as nutrients, growth factors, or drugs, with specific cell-surface receptors. The sensitivity of these interactions to non-physiological conditions, however, makes them challenging to study using in vitro assays. Here we present HATRIC-based ligand receptor capture (HATRIC-LRC), a chemoproteomic technology that successfully identifies target receptors for orphan ligands on living cells ranging from small molecules to intact viruses. HATRIC-LRC combines a click chemistry-based, protein-centric workflow with a water-soluble catalyst to capture ligand-receptor interactions at physiological pH from as few as 1 million cells. We show HATRIC-LRC utility for general antibody target validation within the native nanoscale organization of the surfaceome, as well as receptor identification for a small molecule ligand. HATRIC-LRC further enables the identification of complex extracellular interactomes, such as the host receptor panel for influenza A virus (IAV), the causative agent of the common flu.
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spelling pubmed-59041102018-04-20 HATRIC-based identification of receptors for orphan ligands Sobotzki, Nadine Schafroth, Michael A. Rudnicka, Alina Koetemann, Anika Marty, Florian Goetze, Sandra Yamauchi, Yohei Carreira, Erick M. Wollscheid, Bernd Nat Commun Article Cellular responses depend on the interactions of extracellular ligands, such as nutrients, growth factors, or drugs, with specific cell-surface receptors. The sensitivity of these interactions to non-physiological conditions, however, makes them challenging to study using in vitro assays. Here we present HATRIC-based ligand receptor capture (HATRIC-LRC), a chemoproteomic technology that successfully identifies target receptors for orphan ligands on living cells ranging from small molecules to intact viruses. HATRIC-LRC combines a click chemistry-based, protein-centric workflow with a water-soluble catalyst to capture ligand-receptor interactions at physiological pH from as few as 1 million cells. We show HATRIC-LRC utility for general antibody target validation within the native nanoscale organization of the surfaceome, as well as receptor identification for a small molecule ligand. HATRIC-LRC further enables the identification of complex extracellular interactomes, such as the host receptor panel for influenza A virus (IAV), the causative agent of the common flu. Nature Publishing Group UK 2018-04-17 /pmc/articles/PMC5904110/ /pubmed/29666374 http://dx.doi.org/10.1038/s41467-018-03936-z Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Sobotzki, Nadine
Schafroth, Michael A.
Rudnicka, Alina
Koetemann, Anika
Marty, Florian
Goetze, Sandra
Yamauchi, Yohei
Carreira, Erick M.
Wollscheid, Bernd
HATRIC-based identification of receptors for orphan ligands
title HATRIC-based identification of receptors for orphan ligands
title_full HATRIC-based identification of receptors for orphan ligands
title_fullStr HATRIC-based identification of receptors for orphan ligands
title_full_unstemmed HATRIC-based identification of receptors for orphan ligands
title_short HATRIC-based identification of receptors for orphan ligands
title_sort hatric-based identification of receptors for orphan ligands
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5904110/
https://www.ncbi.nlm.nih.gov/pubmed/29666374
http://dx.doi.org/10.1038/s41467-018-03936-z
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