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Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme
The epoxide hydrolase StEH1 catalyzes the hydrolysis of trans-methylstyrene oxide to 1-phenylpropane-1,2-diol. The (S,S)-epoxide is exclusively transformed into the (1R,2S)-diol, while hydrolysis of the (R,R)-epoxide results in a mixture of product enantiomers. In order to understand the difference...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929373/ https://www.ncbi.nlm.nih.gov/pubmed/29755743 http://dx.doi.org/10.1107/S2052252518003573 |
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author | Janfalk Carlsson, Åsa Bauer, Paul Dobritzsch, Doreen Kamerlin, Shina C. L. Widersten, Mikael |
author_facet | Janfalk Carlsson, Åsa Bauer, Paul Dobritzsch, Doreen Kamerlin, Shina C. L. Widersten, Mikael |
author_sort | Janfalk Carlsson, Åsa |
collection | PubMed |
description | The epoxide hydrolase StEH1 catalyzes the hydrolysis of trans-methylstyrene oxide to 1-phenylpropane-1,2-diol. The (S,S)-epoxide is exclusively transformed into the (1R,2S)-diol, while hydrolysis of the (R,R)-epoxide results in a mixture of product enantiomers. In order to understand the differences in the stereoconfigurations of the products, the reactions were studied kinetically during both the pre-steady-state and steady-state phases. A number of closely related StEH1 variants were analyzed in parallel, and the results were rationalized by structure–activity analysis using the available crystal structures of all tested enzyme variants. Finally, empirical valence-bond simulations were performed in order to provide additional insight into the observed kinetic behaviour and ratios of the diol product enantiomers. These combined data allow us to present a model for the flux through the catalyzed reactions. With the (R,R)-epoxide, ring opening may occur at either C atom and with similar energy barriers for hydrolysis, resulting in a mixture of diol enantiomer products. However, with the (S,S)-epoxide, although either epoxide C atom may react to form the covalent enzyme intermediate, only the pro-(R,S) alkylenzyme is amenable to subsequent hydrolysis. Previously contradictory observations from kinetics experiments as well as product ratios can therefore now be explained for this biocatalytically relevant enzyme. |
format | Online Article Text |
id | pubmed-5929373 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-59293732018-05-11 Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme Janfalk Carlsson, Åsa Bauer, Paul Dobritzsch, Doreen Kamerlin, Shina C. L. Widersten, Mikael IUCrJ Feature Articles The epoxide hydrolase StEH1 catalyzes the hydrolysis of trans-methylstyrene oxide to 1-phenylpropane-1,2-diol. The (S,S)-epoxide is exclusively transformed into the (1R,2S)-diol, while hydrolysis of the (R,R)-epoxide results in a mixture of product enantiomers. In order to understand the differences in the stereoconfigurations of the products, the reactions were studied kinetically during both the pre-steady-state and steady-state phases. A number of closely related StEH1 variants were analyzed in parallel, and the results were rationalized by structure–activity analysis using the available crystal structures of all tested enzyme variants. Finally, empirical valence-bond simulations were performed in order to provide additional insight into the observed kinetic behaviour and ratios of the diol product enantiomers. These combined data allow us to present a model for the flux through the catalyzed reactions. With the (R,R)-epoxide, ring opening may occur at either C atom and with similar energy barriers for hydrolysis, resulting in a mixture of diol enantiomer products. However, with the (S,S)-epoxide, although either epoxide C atom may react to form the covalent enzyme intermediate, only the pro-(R,S) alkylenzyme is amenable to subsequent hydrolysis. Previously contradictory observations from kinetics experiments as well as product ratios can therefore now be explained for this biocatalytically relevant enzyme. International Union of Crystallography 2018-03-22 /pmc/articles/PMC5929373/ /pubmed/29755743 http://dx.doi.org/10.1107/S2052252518003573 Text en © Åsa Janfalk Carlsson et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Feature Articles Janfalk Carlsson, Åsa Bauer, Paul Dobritzsch, Doreen Kamerlin, Shina C. L. Widersten, Mikael Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme |
title | Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme |
title_full | Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme |
title_fullStr | Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme |
title_full_unstemmed | Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme |
title_short | Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme |
title_sort | epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme |
topic | Feature Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929373/ https://www.ncbi.nlm.nih.gov/pubmed/29755743 http://dx.doi.org/10.1107/S2052252518003573 |
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