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Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme

The epoxide hydrolase StEH1 catalyzes the hydrolysis of trans-methylstyrene oxide to 1-phenyl­propane-1,2-diol. The (S,S)-epoxide is exclusively transformed into the (1R,2S)-diol, while hydrolysis of the (R,R)-epoxide results in a mixture of product enantiomers. In order to understand the difference...

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Autores principales: Janfalk Carlsson, Åsa, Bauer, Paul, Dobritzsch, Doreen, Kamerlin, Shina C. L., Widersten, Mikael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929373/
https://www.ncbi.nlm.nih.gov/pubmed/29755743
http://dx.doi.org/10.1107/S2052252518003573
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author Janfalk Carlsson, Åsa
Bauer, Paul
Dobritzsch, Doreen
Kamerlin, Shina C. L.
Widersten, Mikael
author_facet Janfalk Carlsson, Åsa
Bauer, Paul
Dobritzsch, Doreen
Kamerlin, Shina C. L.
Widersten, Mikael
author_sort Janfalk Carlsson, Åsa
collection PubMed
description The epoxide hydrolase StEH1 catalyzes the hydrolysis of trans-methylstyrene oxide to 1-phenyl­propane-1,2-diol. The (S,S)-epoxide is exclusively transformed into the (1R,2S)-diol, while hydrolysis of the (R,R)-epoxide results in a mixture of product enantiomers. In order to understand the differences in the stereoconfigurations of the products, the reactions were studied kinetically during both the pre-steady-state and steady-state phases. A number of closely related StEH1 variants were analyzed in parallel, and the results were rationalized by structure–activity analysis using the available crystal structures of all tested enzyme variants. Finally, empirical valence-bond simulations were performed in order to provide additional insight into the observed kinetic behaviour and ratios of the diol product enantiomers. These combined data allow us to present a model for the flux through the catalyzed reactions. With the (R,R)-epoxide, ring opening may occur at either C atom and with similar energy barriers for hydrolysis, resulting in a mixture of diol enantiomer products. However, with the (S,S)-epoxide, although either epoxide C atom may react to form the covalent enzyme intermediate, only the pro-(R,S) alkylenzyme is amenable to subsequent hydrolysis. Previously contradictory observations from kinetics experiments as well as product ratios can therefore now be explained for this biocatalytically relevant enzyme.
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spelling pubmed-59293732018-05-11 Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme Janfalk Carlsson, Åsa Bauer, Paul Dobritzsch, Doreen Kamerlin, Shina C. L. Widersten, Mikael IUCrJ Feature Articles The epoxide hydrolase StEH1 catalyzes the hydrolysis of trans-methylstyrene oxide to 1-phenyl­propane-1,2-diol. The (S,S)-epoxide is exclusively transformed into the (1R,2S)-diol, while hydrolysis of the (R,R)-epoxide results in a mixture of product enantiomers. In order to understand the differences in the stereoconfigurations of the products, the reactions were studied kinetically during both the pre-steady-state and steady-state phases. A number of closely related StEH1 variants were analyzed in parallel, and the results were rationalized by structure–activity analysis using the available crystal structures of all tested enzyme variants. Finally, empirical valence-bond simulations were performed in order to provide additional insight into the observed kinetic behaviour and ratios of the diol product enantiomers. These combined data allow us to present a model for the flux through the catalyzed reactions. With the (R,R)-epoxide, ring opening may occur at either C atom and with similar energy barriers for hydrolysis, resulting in a mixture of diol enantiomer products. However, with the (S,S)-epoxide, although either epoxide C atom may react to form the covalent enzyme intermediate, only the pro-(R,S) alkylenzyme is amenable to subsequent hydrolysis. Previously contradictory observations from kinetics experiments as well as product ratios can therefore now be explained for this biocatalytically relevant enzyme. International Union of Crystallography 2018-03-22 /pmc/articles/PMC5929373/ /pubmed/29755743 http://dx.doi.org/10.1107/S2052252518003573 Text en © Åsa Janfalk Carlsson et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Feature Articles
Janfalk Carlsson, Åsa
Bauer, Paul
Dobritzsch, Doreen
Kamerlin, Shina C. L.
Widersten, Mikael
Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme
title Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme
title_full Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme
title_fullStr Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme
title_full_unstemmed Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme
title_short Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme
title_sort epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme
topic Feature Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929373/
https://www.ncbi.nlm.nih.gov/pubmed/29755743
http://dx.doi.org/10.1107/S2052252518003573
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