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Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors
Although the structure of a genetically encoded regulatory circuit is an important determinant of its function, the relationship between circuit topology and the dynamical behaviors it can exhibit is not well understood. Here, we explore the range of behaviors available to the AC-DC circuit. This ci...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cell Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929911/ https://www.ncbi.nlm.nih.gov/pubmed/29574056 http://dx.doi.org/10.1016/j.cels.2018.02.008 |
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author | Perez-Carrasco, Ruben Barnes, Chris P. Schaerli, Yolanda Isalan, Mark Briscoe, James Page, Karen M. |
author_facet | Perez-Carrasco, Ruben Barnes, Chris P. Schaerli, Yolanda Isalan, Mark Briscoe, James Page, Karen M. |
author_sort | Perez-Carrasco, Ruben |
collection | PubMed |
description | Although the structure of a genetically encoded regulatory circuit is an important determinant of its function, the relationship between circuit topology and the dynamical behaviors it can exhibit is not well understood. Here, we explore the range of behaviors available to the AC-DC circuit. This circuit consists of three genes connected as a combination of a toggle switch and a repressilator. Using dynamical systems theory, we show that the AC-DC circuit exhibits both oscillations and bistability within the same region of parameter space; this generates emergent behaviors not available to either the toggle switch or the repressilator alone. The AC-DC circuit can switch on oscillations via two distinct mechanisms, one of which induces coherence into ensembles of oscillators. In addition, we show that in the presence of noise, the AC-DC circuit can behave as an excitable system capable of spatial signal propagation or coherence resonance. Together, these results demonstrate how combinations of simple motifs can exhibit multiple complex behaviors. |
format | Online Article Text |
id | pubmed-5929911 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Cell Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-59299112018-05-03 Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors Perez-Carrasco, Ruben Barnes, Chris P. Schaerli, Yolanda Isalan, Mark Briscoe, James Page, Karen M. Cell Syst Article Although the structure of a genetically encoded regulatory circuit is an important determinant of its function, the relationship between circuit topology and the dynamical behaviors it can exhibit is not well understood. Here, we explore the range of behaviors available to the AC-DC circuit. This circuit consists of three genes connected as a combination of a toggle switch and a repressilator. Using dynamical systems theory, we show that the AC-DC circuit exhibits both oscillations and bistability within the same region of parameter space; this generates emergent behaviors not available to either the toggle switch or the repressilator alone. The AC-DC circuit can switch on oscillations via two distinct mechanisms, one of which induces coherence into ensembles of oscillators. In addition, we show that in the presence of noise, the AC-DC circuit can behave as an excitable system capable of spatial signal propagation or coherence resonance. Together, these results demonstrate how combinations of simple motifs can exhibit multiple complex behaviors. Cell Press 2018-04-25 /pmc/articles/PMC5929911/ /pubmed/29574056 http://dx.doi.org/10.1016/j.cels.2018.02.008 Text en © 2018 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Perez-Carrasco, Ruben Barnes, Chris P. Schaerli, Yolanda Isalan, Mark Briscoe, James Page, Karen M. Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors |
title | Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors |
title_full | Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors |
title_fullStr | Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors |
title_full_unstemmed | Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors |
title_short | Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors |
title_sort | combining a toggle switch and a repressilator within the ac-dc circuit generates distinct dynamical behaviors |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929911/ https://www.ncbi.nlm.nih.gov/pubmed/29574056 http://dx.doi.org/10.1016/j.cels.2018.02.008 |
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