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Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors

Although the structure of a genetically encoded regulatory circuit is an important determinant of its function, the relationship between circuit topology and the dynamical behaviors it can exhibit is not well understood. Here, we explore the range of behaviors available to the AC-DC circuit. This ci...

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Detalles Bibliográficos
Autores principales: Perez-Carrasco, Ruben, Barnes, Chris P., Schaerli, Yolanda, Isalan, Mark, Briscoe, James, Page, Karen M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cell Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929911/
https://www.ncbi.nlm.nih.gov/pubmed/29574056
http://dx.doi.org/10.1016/j.cels.2018.02.008
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author Perez-Carrasco, Ruben
Barnes, Chris P.
Schaerli, Yolanda
Isalan, Mark
Briscoe, James
Page, Karen M.
author_facet Perez-Carrasco, Ruben
Barnes, Chris P.
Schaerli, Yolanda
Isalan, Mark
Briscoe, James
Page, Karen M.
author_sort Perez-Carrasco, Ruben
collection PubMed
description Although the structure of a genetically encoded regulatory circuit is an important determinant of its function, the relationship between circuit topology and the dynamical behaviors it can exhibit is not well understood. Here, we explore the range of behaviors available to the AC-DC circuit. This circuit consists of three genes connected as a combination of a toggle switch and a repressilator. Using dynamical systems theory, we show that the AC-DC circuit exhibits both oscillations and bistability within the same region of parameter space; this generates emergent behaviors not available to either the toggle switch or the repressilator alone. The AC-DC circuit can switch on oscillations via two distinct mechanisms, one of which induces coherence into ensembles of oscillators. In addition, we show that in the presence of noise, the AC-DC circuit can behave as an excitable system capable of spatial signal propagation or coherence resonance. Together, these results demonstrate how combinations of simple motifs can exhibit multiple complex behaviors.
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spelling pubmed-59299112018-05-03 Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors Perez-Carrasco, Ruben Barnes, Chris P. Schaerli, Yolanda Isalan, Mark Briscoe, James Page, Karen M. Cell Syst Article Although the structure of a genetically encoded regulatory circuit is an important determinant of its function, the relationship between circuit topology and the dynamical behaviors it can exhibit is not well understood. Here, we explore the range of behaviors available to the AC-DC circuit. This circuit consists of three genes connected as a combination of a toggle switch and a repressilator. Using dynamical systems theory, we show that the AC-DC circuit exhibits both oscillations and bistability within the same region of parameter space; this generates emergent behaviors not available to either the toggle switch or the repressilator alone. The AC-DC circuit can switch on oscillations via two distinct mechanisms, one of which induces coherence into ensembles of oscillators. In addition, we show that in the presence of noise, the AC-DC circuit can behave as an excitable system capable of spatial signal propagation or coherence resonance. Together, these results demonstrate how combinations of simple motifs can exhibit multiple complex behaviors. Cell Press 2018-04-25 /pmc/articles/PMC5929911/ /pubmed/29574056 http://dx.doi.org/10.1016/j.cels.2018.02.008 Text en © 2018 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Perez-Carrasco, Ruben
Barnes, Chris P.
Schaerli, Yolanda
Isalan, Mark
Briscoe, James
Page, Karen M.
Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors
title Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors
title_full Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors
title_fullStr Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors
title_full_unstemmed Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors
title_short Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors
title_sort combining a toggle switch and a repressilator within the ac-dc circuit generates distinct dynamical behaviors
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929911/
https://www.ncbi.nlm.nih.gov/pubmed/29574056
http://dx.doi.org/10.1016/j.cels.2018.02.008
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