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Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis
Additional value can be potentially created by applying big data tools to address pharmacometric problems. The performances of machine learning (ML) methods and the Cox regression model were evaluated based on simulated time‐to‐event data synthesized under various preset scenarios, i.e., with linear...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5944589/ https://www.ncbi.nlm.nih.gov/pubmed/29536640 http://dx.doi.org/10.1111/cts.12541 |
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author | Gong, Xiajing Hu, Meng Zhao, Liang |
author_facet | Gong, Xiajing Hu, Meng Zhao, Liang |
author_sort | Gong, Xiajing |
collection | PubMed |
description | Additional value can be potentially created by applying big data tools to address pharmacometric problems. The performances of machine learning (ML) methods and the Cox regression model were evaluated based on simulated time‐to‐event data synthesized under various preset scenarios, i.e., with linear vs. nonlinear and dependent vs. independent predictors in the proportional hazard function, or with high‐dimensional data featured by a large number of predictor variables. Our results showed that ML‐based methods outperformed the Cox model in prediction performance as assessed by concordance index and in identifying the preset influential variables for high‐dimensional data. The prediction performances of ML‐based methods are also less sensitive to data size and censoring rates than the Cox regression model. In conclusion, ML‐based methods provide a powerful tool for time‐to‐event analysis, with a built‐in capacity for high‐dimensional data and better performance when the predictor variables assume nonlinear relationships in the hazard function. |
format | Online Article Text |
id | pubmed-5944589 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-59445892018-05-14 Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis Gong, Xiajing Hu, Meng Zhao, Liang Clin Transl Sci Research Additional value can be potentially created by applying big data tools to address pharmacometric problems. The performances of machine learning (ML) methods and the Cox regression model were evaluated based on simulated time‐to‐event data synthesized under various preset scenarios, i.e., with linear vs. nonlinear and dependent vs. independent predictors in the proportional hazard function, or with high‐dimensional data featured by a large number of predictor variables. Our results showed that ML‐based methods outperformed the Cox model in prediction performance as assessed by concordance index and in identifying the preset influential variables for high‐dimensional data. The prediction performances of ML‐based methods are also less sensitive to data size and censoring rates than the Cox regression model. In conclusion, ML‐based methods provide a powerful tool for time‐to‐event analysis, with a built‐in capacity for high‐dimensional data and better performance when the predictor variables assume nonlinear relationships in the hazard function. John Wiley and Sons Inc. 2018-03-13 2018-05 /pmc/articles/PMC5944589/ /pubmed/29536640 http://dx.doi.org/10.1111/cts.12541 Text en © 2018 The Authors. Clinical and Translational Science published by Wiley Periodicals, Inc. on behalf of American Society for Clinical Pharmacology and Therapeutics This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Gong, Xiajing Hu, Meng Zhao, Liang Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis |
title | Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis |
title_full | Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis |
title_fullStr | Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis |
title_full_unstemmed | Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis |
title_short | Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis |
title_sort | big data toolsets to pharmacometrics: application of machine learning for time‐to‐event analysis |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5944589/ https://www.ncbi.nlm.nih.gov/pubmed/29536640 http://dx.doi.org/10.1111/cts.12541 |
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