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Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis

Additional value can be potentially created by applying big data tools to address pharmacometric problems. The performances of machine learning (ML) methods and the Cox regression model were evaluated based on simulated time‐to‐event data synthesized under various preset scenarios, i.e., with linear...

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Detalles Bibliográficos
Autores principales: Gong, Xiajing, Hu, Meng, Zhao, Liang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5944589/
https://www.ncbi.nlm.nih.gov/pubmed/29536640
http://dx.doi.org/10.1111/cts.12541
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author Gong, Xiajing
Hu, Meng
Zhao, Liang
author_facet Gong, Xiajing
Hu, Meng
Zhao, Liang
author_sort Gong, Xiajing
collection PubMed
description Additional value can be potentially created by applying big data tools to address pharmacometric problems. The performances of machine learning (ML) methods and the Cox regression model were evaluated based on simulated time‐to‐event data synthesized under various preset scenarios, i.e., with linear vs. nonlinear and dependent vs. independent predictors in the proportional hazard function, or with high‐dimensional data featured by a large number of predictor variables. Our results showed that ML‐based methods outperformed the Cox model in prediction performance as assessed by concordance index and in identifying the preset influential variables for high‐dimensional data. The prediction performances of ML‐based methods are also less sensitive to data size and censoring rates than the Cox regression model. In conclusion, ML‐based methods provide a powerful tool for time‐to‐event analysis, with a built‐in capacity for high‐dimensional data and better performance when the predictor variables assume nonlinear relationships in the hazard function.
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spelling pubmed-59445892018-05-14 Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis Gong, Xiajing Hu, Meng Zhao, Liang Clin Transl Sci Research Additional value can be potentially created by applying big data tools to address pharmacometric problems. The performances of machine learning (ML) methods and the Cox regression model were evaluated based on simulated time‐to‐event data synthesized under various preset scenarios, i.e., with linear vs. nonlinear and dependent vs. independent predictors in the proportional hazard function, or with high‐dimensional data featured by a large number of predictor variables. Our results showed that ML‐based methods outperformed the Cox model in prediction performance as assessed by concordance index and in identifying the preset influential variables for high‐dimensional data. The prediction performances of ML‐based methods are also less sensitive to data size and censoring rates than the Cox regression model. In conclusion, ML‐based methods provide a powerful tool for time‐to‐event analysis, with a built‐in capacity for high‐dimensional data and better performance when the predictor variables assume nonlinear relationships in the hazard function. John Wiley and Sons Inc. 2018-03-13 2018-05 /pmc/articles/PMC5944589/ /pubmed/29536640 http://dx.doi.org/10.1111/cts.12541 Text en © 2018 The Authors. Clinical and Translational Science published by Wiley Periodicals, Inc. on behalf of American Society for Clinical Pharmacology and Therapeutics This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research
Gong, Xiajing
Hu, Meng
Zhao, Liang
Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis
title Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis
title_full Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis
title_fullStr Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis
title_full_unstemmed Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis
title_short Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time‐to‐Event Analysis
title_sort big data toolsets to pharmacometrics: application of machine learning for time‐to‐event analysis
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5944589/
https://www.ncbi.nlm.nih.gov/pubmed/29536640
http://dx.doi.org/10.1111/cts.12541
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