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GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies
BACKGROUND: Seed location filtering is critical in DNA read mapping, a process where billions of DNA fragments (reads) sampled from a donor are mapped onto a reference genome to identify genomic variants of the donor. State-of-the-art read mappers 1) quickly generate possible mapping locations for s...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5954284/ https://www.ncbi.nlm.nih.gov/pubmed/29764378 http://dx.doi.org/10.1186/s12864-018-4460-0 |