Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data

Octopus-toolkit is a stand-alone application for retrieving and processing large sets of next-generation sequencing (NGS) data with a single step. Octopus-toolkit is an automated set-up-and-analysis pipeline utilizing the Aspera, SRA Toolkit, FastQC, Trimmomatic, HISAT2, STAR, Samtools, and HOMER ap...

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Detalles Bibliográficos
Autores principales: Kim, Taemook, Seo, Hogyu David, Hennighausen, Lothar, Lee, Daeyoup, Kang, Keunsoo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Methods Online
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961211/
https://www.ncbi.nlm.nih.gov/pubmed/29420797
http://dx.doi.org/10.1093/nar/gky083

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961211/
https://www.ncbi.nlm.nih.gov/pubmed/29420797
http://dx.doi.org/10.1093/nar/gky083

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