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Testing Pneumonia Vaccines in the Elderly: Determining a Case Definition for Pneumococcal Pneumonia in the Absence of a Gold Standard

Clinical assessments of vaccines to prevent pneumococcal community-acquired pneumonia (CAP) require sensitive and specific case definitions, but there is no gold standard diagnostic test. To develop a new case definition suitable for vaccine efficacy studies, we applied latent class analysis (LCA) t...

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Autores principales: Jokinen, Jukka, Snellman, Marja, Palmu, Arto A, Saukkoriipi, Annika, Verlant, Vincent, Pascal, Thierry, Devaster, Jeanne-Marie, Hausdorff, William P, Kilpi, Terhi M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5982705/
https://www.ncbi.nlm.nih.gov/pubmed/29253067
http://dx.doi.org/10.1093/aje/kwx373
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author Jokinen, Jukka
Snellman, Marja
Palmu, Arto A
Saukkoriipi, Annika
Verlant, Vincent
Pascal, Thierry
Devaster, Jeanne-Marie
Hausdorff, William P
Kilpi, Terhi M
author_facet Jokinen, Jukka
Snellman, Marja
Palmu, Arto A
Saukkoriipi, Annika
Verlant, Vincent
Pascal, Thierry
Devaster, Jeanne-Marie
Hausdorff, William P
Kilpi, Terhi M
author_sort Jokinen, Jukka
collection PubMed
description Clinical assessments of vaccines to prevent pneumococcal community-acquired pneumonia (CAP) require sensitive and specific case definitions, but there is no gold standard diagnostic test. To develop a new case definition suitable for vaccine efficacy studies, we applied latent class analysis (LCA) to the results from 7 diagnostic tests for pneumococcal etiology on clinical specimens from 323 elderly persons with radiologically confirmed pneumonia enrolled in the Finnish Community-Acquired Pneumonia Epidemiology study during 2005–2007. Compared with the conventional use of LCA, which is mainly to determine sensitivities and specificities of different tests, we instead used LCA as an appropriate instrument to predict the probability of pneumococcal etiology for each CAP case based on individual test profiles, and we used the predictions to minimize the sample size that would be needed for a vaccine efficacy trial. When compared with the conventional laboratory criteria of encapsulated pneumococci in culture, in blood culture or high-quality sputum culture, or urine antigen positivity, our optimized case definition for pneumococcal CAP resulted in a trial sample size that was almost 20,000 subjects smaller. We believe that the novel application of LCA detailed here to determine a case definition for pneumococcal CAP could also be similarly applied to other diseases without a gold standard.
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spelling pubmed-59827052018-06-06 Testing Pneumonia Vaccines in the Elderly: Determining a Case Definition for Pneumococcal Pneumonia in the Absence of a Gold Standard Jokinen, Jukka Snellman, Marja Palmu, Arto A Saukkoriipi, Annika Verlant, Vincent Pascal, Thierry Devaster, Jeanne-Marie Hausdorff, William P Kilpi, Terhi M Am J Epidemiol Practice of Epidemiology Clinical assessments of vaccines to prevent pneumococcal community-acquired pneumonia (CAP) require sensitive and specific case definitions, but there is no gold standard diagnostic test. To develop a new case definition suitable for vaccine efficacy studies, we applied latent class analysis (LCA) to the results from 7 diagnostic tests for pneumococcal etiology on clinical specimens from 323 elderly persons with radiologically confirmed pneumonia enrolled in the Finnish Community-Acquired Pneumonia Epidemiology study during 2005–2007. Compared with the conventional use of LCA, which is mainly to determine sensitivities and specificities of different tests, we instead used LCA as an appropriate instrument to predict the probability of pneumococcal etiology for each CAP case based on individual test profiles, and we used the predictions to minimize the sample size that would be needed for a vaccine efficacy trial. When compared with the conventional laboratory criteria of encapsulated pneumococci in culture, in blood culture or high-quality sputum culture, or urine antigen positivity, our optimized case definition for pneumococcal CAP resulted in a trial sample size that was almost 20,000 subjects smaller. We believe that the novel application of LCA detailed here to determine a case definition for pneumococcal CAP could also be similarly applied to other diseases without a gold standard. Oxford University Press 2018-06 2018-01-03 /pmc/articles/PMC5982705/ /pubmed/29253067 http://dx.doi.org/10.1093/aje/kwx373 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. http://creativecommons.org/licenses/by-nc/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journalpermissions@oup.com.
spellingShingle Practice of Epidemiology
Jokinen, Jukka
Snellman, Marja
Palmu, Arto A
Saukkoriipi, Annika
Verlant, Vincent
Pascal, Thierry
Devaster, Jeanne-Marie
Hausdorff, William P
Kilpi, Terhi M
Testing Pneumonia Vaccines in the Elderly: Determining a Case Definition for Pneumococcal Pneumonia in the Absence of a Gold Standard
title Testing Pneumonia Vaccines in the Elderly: Determining a Case Definition for Pneumococcal Pneumonia in the Absence of a Gold Standard
title_full Testing Pneumonia Vaccines in the Elderly: Determining a Case Definition for Pneumococcal Pneumonia in the Absence of a Gold Standard
title_fullStr Testing Pneumonia Vaccines in the Elderly: Determining a Case Definition for Pneumococcal Pneumonia in the Absence of a Gold Standard
title_full_unstemmed Testing Pneumonia Vaccines in the Elderly: Determining a Case Definition for Pneumococcal Pneumonia in the Absence of a Gold Standard
title_short Testing Pneumonia Vaccines in the Elderly: Determining a Case Definition for Pneumococcal Pneumonia in the Absence of a Gold Standard
title_sort testing pneumonia vaccines in the elderly: determining a case definition for pneumococcal pneumonia in the absence of a gold standard
topic Practice of Epidemiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5982705/
https://www.ncbi.nlm.nih.gov/pubmed/29253067
http://dx.doi.org/10.1093/aje/kwx373
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